3300031163: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_8mM_2 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031163
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0267095 | Ga0228574
• Sample Name: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_8mM_2 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 8363626
• Sequencing Scaffolds: 9
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	5
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001682	Metagenome / Metatranscriptome	652	Y
F008291	Metagenome / Metatranscriptome	335	Y
F013862	Metagenome / Metatranscriptome	267	Y
F038555	Metagenome / Metatranscriptome	165	Y
F039966	Metagenome / Metatranscriptome	162	N
F043734	Metagenome / Metatranscriptome	155	Y
F076965	Metagenome / Metatranscriptome	117	Y
F079587	Metagenome / Metatranscriptome	115	N
F085009	Metagenome / Metatranscriptome	111	N
F086389	Metagenome / Metatranscriptome	110	Y
F095000	Metagenome / Metatranscriptome	105	N
F102393	Metagenome / Metatranscriptome	101	N
F104431	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228574_100868	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1248
Ga0228574_101131	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	1120
Ga0228574_101908	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	884
Ga0228574_103179	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	695
Ga0228574_103452	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	661
Ga0228574_104294	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	593
Ga0228574_104478	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	581
Ga0228574_105060	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	545
Ga0228574_105382	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	528

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228574_100868	Ga0228574_1008681	F102393	RVAAFLLHPHSRPPTSSTRMMLCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNDAAEQLTKFTLLCSCASAWLYKSEPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKKDKDKNFTGAKDMELVRH
Ga0228574_100972	Ga0228574_1009721	F085009	AESFAQPAPGPPAKEATGAAAPKCFFCLRSNAGTPPLEMPWERAKDGVLPGPFLTPISLTHAPPTSVLAPLTTFEIGDFVRANWAGRGVMYPGEVLAINHEDETLDILYDDGDFESHVPRQRVHPVSIELTDAFHAFGVGDVVKADLKGHGSWYTGRIIAIDTKFRVFTIKYENGHLEKHVPPSRVQPMSTGHIKQDYVHGERVRANWQSCGTWCLGRICSVNHSEGTFNVQYDDGEIELHVAAHSLQPAEDADFKAAEAEPLPFACTLVSKASGGFGSSSGLGSSSLGYGSLAR
Ga0228574_101131	Ga0228574_1011311	F001682	CVGDIVLSLNGIMLEEAQSDANPIVPMSAVAFTAIAALSNTAEITSTNIRSGAAFDNIRASWNQALKLGDFSSKLRCDYDYKDNKDFLKEVSLTGDLMEASSNDELRVSYDVTHNFPQRKTRVKLTANTGGNTIRAELDDRQLKQVSAQRDLDLGDQKVNTDVSWMVKAQTARVKLMSNLGGGNKDRVKAQIDYDTRDNSASYEVGYQHQLNDGRDVSATFNPGDKNLDVEFVDNKFESGATWTAKASVPLENAGGNLLDNAKVTLKRSWSW
Ga0228574_101536	Ga0228574_1015362	F079587	VLDFSRTSEHTPSIRSSSQSTMLSTLALATMIPTAFISIDTSPFFYNDLMAVQAMMRPPPSSSWRCTDEECMMSYPVSHLEDASLRLVLGDDGKTITLSGERKIEGCQCQPRDDVIITLPFTPSAPEALSSSIDKGRLTITLSKHAKIPEAKTILIKRQEPKTADASQIRFVPQESASASVVEEKMLDAFDKFRAVAALARKDGQETPAQASNASETVNVTAQA
Ga0228574_101592	Ga0228574_1015921	F086389	DKYVKAHPNLTKTQMRDLFDKRPDFVKCFDASPEELMRIGRAPALRLMLEQSKDLKAALDQKEDVRKILESKPDLTRIELNELVHTNAALKDLYDSRPELKELLQQRARLFEEERKALEDQKADAFIAGPCVKVSALYLKKEGVLVTIALPESMVRHMRFEFSSVRPGTTNVLAQHQGRSVVAFELRLEDLLNMQAAGQFVLEQGKLKLNVDKTLLFLNEKMRF
Ga0228574_101908	Ga0228574_1019081	F104431	KLCTAKSIAHMVPTQLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHGCLKHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKEPKAIKALHSVRDASRMLAELNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLPRKHKVCASCVCTR
Ga0228574_103179	Ga0228574_1031791	F095000	AARDSLDAAAADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL
Ga0228574_103452	Ga0228574_1034521	F008291	EANGLRMANIPDLRSVQIASASLANDVNNLRRAVAKVEVIPEEDAKVWSFQGASGRRVLVDRRAPAPMPYGNARYTASSWKVGARSTEVHPITGQHTYDTGNLYRTVHWKDEGFGLNGRFTDAIALAGMWRNDGLNTAATRSKAVSDPTGWGTPKDNISFM
Ga0228574_103676	Ga0228574_1036761	F038555	LADDLNKADYDNDEDAFYDLGIELLSGRLKVAKVYGQEEPPAAEDELEWETRYVVLYDTRKMCLYDGMQNGEPVGDRGLIDLENIQSVEKVLGVPTFVMKGYKKVYLFKLEPHDEVMMRTWIGAISVELSSQ
Ga0228574_104294	Ga0228574_1042941	F076965	QITGDERTSRKNQITFKAALSIPQCRWNFLRSQTIEQVEAGDVDADSSAVATLDFTELGECIARCAVNMYEHLMKTFLPSHDRKAMTMADATRSFLRNLLSEKTPEMCMWEATVIKADRYDWQKQTKMLPGFSPAQHKLWLKCWSQVTLIDVHHFPLWEKGVHDTLQQHFSALMRIFSHYSKGVSGVDSVADALEIE
Ga0228574_104478	Ga0228574_1044781	F039966	LRKRARAARPNIMNDQERVRLRAREGEAVEWTRRVAQRASTLKDMMDDAPTEGGVYPVPTIAAAELAVLREMCEADSMPARLAQCSISELFRLVEGASFLDAPGALNHAQRALATRLNGKRADELRELLGAMDDFGSAENRVAALAEPAFSPGGQLSVATVGSAAGPPALQPQPSLSGMAATEDAKEVALGMV
Ga0228574_105060	Ga0228574_1050601	F043734	AGAYQHAHATPSQAAMMSFFRAKQLGIPAARWGVAAGSIGFFLLYEDLPQLILQTPYGNFPGWTGVAVAFGMMKDPKAE
Ga0228574_105382	Ga0228574_1053821	F013862	VAQGGSVIGLLGVGEYYKRLTKSSKALLVLVELLLCALVPFVLSLGPSVLPQLAVVPLTVLWGLAYALPFYIPPGEFAMQIGGKKGTALFTNIFDASGFAASALWNPWASALAKNNDFKTILYSQALFGAISSLTMPLCMYRQMLKEQAAKKKE