3300031154: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_D6_8mM_3 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031154
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0267111 | Ga0228590
• Sample Name: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_D6_8mM_3 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19649365
• Sequencing Scaffolds: 15
• Novel Protein Genes: 19
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	10
Not Available	2
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001682	Metagenome / Metatranscriptome	652	Y
F007922	Metagenome / Metatranscriptome	342	Y
F008291	Metagenome / Metatranscriptome	335	Y
F009117	Metagenome / Metatranscriptome	322	Y
F010978	Metagenome / Metatranscriptome	296	Y
F022338	Metagenome / Metatranscriptome	214	Y
F035605	Metagenome / Metatranscriptome	171	Y
F042124	Metagenome / Metatranscriptome	158	N
F042134	Metagenome / Metatranscriptome	158	Y
F043744	Metagenome / Metatranscriptome	155	Y
F046205	Metagenome / Metatranscriptome	151	Y
F068493	Metagenome / Metatranscriptome	124	N
F069666	Metagenome / Metatranscriptome	123	Y
F079587	Metagenome / Metatranscriptome	115	N
F086559	Metagenome / Metatranscriptome	110	Y
F090311	Metagenome / Metatranscriptome	108	N
F095000	Metagenome / Metatranscriptome	105	N
F100254	Metagenome / Metatranscriptome	102	Y
F104622	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228590_101136	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1945
Ga0228590_102373	Not Available	1423
Ga0228590_103248	Not Available	1215
Ga0228590_104854	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	984
Ga0228590_105537	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	916
Ga0228590_105679	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	903
Ga0228590_106020	All Organisms → cellular organisms → Eukaryota	873
Ga0228590_106348	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	845
Ga0228590_107729	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	750
Ga0228590_107915	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	739
Ga0228590_107973	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	736
Ga0228590_108954	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	682
Ga0228590_109420	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	660
Ga0228590_109964	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	637
Ga0228590_111630	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	570

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228590_101136	Ga0228590_1011362	F001682	MSVLLGLEASKLDNYPIVPMSAVAFTAIAALSNTAEITSTNIRSGAAFDNIRASWNQALKLGDFSSKLRCDYDYKDNKDFLKEVSLTGDLMEASSNDELRVSYDVTHNFPQRKTRVKLTANTGGNTIRAELDDRQLKQVSAQRDLDLGDQKVNTDVSWMVKAQTARVKLMSNLGGGNKDRVKAQIDYDTRDNSASYEVGYQHQLNDGRDVSATFNPGDKNLDVEFVDNKFESGATWTAKASVPLENAGGNLLDNAKVTLKRSWSW
Ga0228590_102373	Ga0228590_1023731	F009117	ARCGCDKYRAVEQIKVGEKVAAMIANILGDLNEDQVITAATYITAERYTPAAAPPKGVSPEVHREWLMTWEMLQLSALPGFPLWEKDVHDVLAGNLESLTSIFRAYAASSLEGSATEMDMEEFHDFVIEAGLITDMYSFDTMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRLGKDQKNADKFGEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALGAQLEKLSQFYELVSAGRPFLELDQWLKTLEGKLLFSDIMVDGYVVRLTEPQARAAFYASAATPSSGLLPDELPVCVARTACDKYKGVTPMGPGAKVTGFLANLLGDDDEEDVVLAATGGKALKD
Ga0228590_103248	Ga0228590_1032481	F043744	ANATNTAQVRAQRQDGKRDAQSRGNDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSIPTCKAAFMDSQSTEQLTVGKGDAVSSASVLDFDEWLECIARMAVAKYSAVKQMENSQKVKAFCMNFFGEASEEDCMRQATYIRAVRYDVSESQPLKDETPEEHAAFLAEFKQLDLMGLYGFPLWEAEVHDLLHANFKELASIFRSYCKSLGETATSDSSRTMDMEEFHDFVIDCGLETKLAIMKGAEPAVYTFNQMKECFTKADKSG
Ga0228590_104178	Ga0228590_1041782	F079587	WTVLDFSRTSEHTPSIRSSSQSTMLSTLALATMIPTAFISIDTSPFFYNDLMAVQAMMRPPPSSSWRCTDEECMMSYPVSHLEDASLRLVLGDDGKTITLSGERKIEGCQCQPRDDVIITLPFTPSAPEALSSSIDKGRLTITLSKHAKIPEAKTILIKRQEPKTADASQIRFVPQESASASVVEEKMLDAFDKFRAVAALARKDGQETPAQASNASETVNVTAQA
Ga0228590_104854	Ga0228590_1048541	F069666	PGDAAVAGRMLPGLARLHGYGHVVDVAAVRAADLQCEMVGDWRRPSLLHGAAKDALNSCITGEGEPPLRLTIAAVACAGSGVICGIPVQQLREDSVEVLNLFDRGLHAPAAMLVAYLIPATSVLKNCKLLKNRFDVESAKKLTKMGMEKSIMLSGLTCDRTAANFMNEGLQPADAILIASDLQVVTTLYLSGNNIGTRVPSRSRRR
Ga0228590_105537	Ga0228590_1055371	F042134	RVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCKAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIARIACSKYSAIKQMDPAAKVKAFLQNFFGEMSEEDCMRTSTYIRAVRYDLGDSVPLKDESPEEHAAFLAEFKQLDLSGLYGFPLWEAEVHDLLHANFRELASIFRGYCKSLGEGSSDESAKTMDLEEFHDFVIDVGLETKLHTNKAAAPALYVFEQMKEQFTRADKSGKGLAGPAANSELVLYEFLNVITRVSFYRLNPEYGELTMEHQDTLLPVPQCLDKTLRECILPK
Ga0228590_105679	Ga0228590_1056791	F090311	MRKAIKSWSEFAKEALQSVRCATAALRMSETRGAFGTWHEHVCSESERDAAMRRAAASMLQSSMRASLNTWMSYAEEHAEASRVLAGALSSLQPEGRAMRSALNTWTGVMMQRRSMVVAVASLIRGEQLWGLRVWSAHAALVRRQRERVEETARQAIKSMSLQSLRAAMNTWVAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDRQVMASAVNCMSLRLQRAGFASWVSATEVSVTKQQLRSTLSSLSPAKRSMRKAIKSWSEFAKEALQSVRCATAALRMSETRGAFGTWHE
Ga0228590_106020	Ga0228590_1060201	F010978	SNPLERTSVQLMLVVAGIALFANSAVDRTDDGLPWEVTLAGFCVFAVVFCAIYAKKTEVALSIVTMIAIVMPTYYVHNYEVPASNWELGSMFPLKTSKEEVLRGCFKAAPNASRFDKMLPFDLSLAHFSVLPPGLALRVNTSEIYHSGLKLDDPLTKERTHDYLLFSSPRKVKEKTESLVLLARVPSKFEVWPKNIEDYSFSLQTASNIVAPPTMFGEVTKLDKGPAIEILQRKHHLRPFMLDVYRVEYVYE
Ga0228590_106348	Ga0228590_1063481	F042124	PAGGRPSRSPSRSDVAKAASLAEEPLIPPVVRVKNSAKAGRPFSNYQKHQAKTQALKGHTIHITSVGPYISRPEQRNLDDQGLRYRSIHKEAFKPAGLWDKYEPPLGGWGFAAAGFVLPDDLPETAKRFGSFYNTHLHQFRATAPKGNIYM
Ga0228590_107409	Ga0228590_1074091	F068493	KSLGHLLNRGLSRGFGAWLEMAIERAVFLQKLRKGLSRMVNRKLAFGFDRWITAFAPRDDPMSKALLYLLNRELARGWTAWYETWEVLKAKRESMRKSLGHLLHRGLSRGWGAWLEMLEERAAFLQLLSKGVRFMLNRKLAFGFVSWAQAIDRTLRQTEGSGHMSRAFLYFKNRHLARGWTAWHAEWADSVAARTIMRKSLGHLLNRGLSRGFGAWLEMAIERAVFLQKLRKGLSRMVNRKLAFGFDRWIAAFAPR
Ga0228590_107729	Ga0228590_1077291	F095000	AAARDSLDAAAADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLART
Ga0228590_107915	Ga0228590_1079151	F035605	EQVITAATYITAERFSPGTSPPKGVAAENHKEWLTTWELLQLSTLPGFPLWEKEVYDLLALHLVELQSIFKAYASSSLQGSATDMDMEEFHDFVIEAGLITDLYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRKGKDQKNADKFDEVPLPGCLSDMLTKLVLPNARRETHAQEFLEKIWPMSEVSSALDAQKEAIATFYEMVSAGRPFLELSQWFDALAGKLLFSDVTID
Ga0228590_107973	Ga0228590_1079731	F104622	ITVYGCEFLASLLVFVAGLVADSDLEGSLMLAVRAADIMVYCAFVPMILMGWDNLVCPPLKMFLKGEGGTLETLYLMFIALLLIPVSIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVGPFEEVQPLEGDAALLA
Ga0228590_108757	Ga0228590_1087571	F100254	PQWGSKYNKRELTPVPESVQLLLDECILPKAKRDTSYEFKKLLACDGPTQAVLAEYREQLQNWVRPILHRARRPDNPNPQMTYKMWVALMDGPDPETREITGPKPPCPKMVGEWTLTQESQITGDERTAKKNVLEFKCELSIPKCRWNFLRSQTVDQMGADEAAEGENSDFATLDFSEMLECIARCGVDKYSLCMKPGMLYRIMLACSYPHPPARLVSRAAAPPPKVALL
Ga0228590_108954	Ga0228590_1089541	F022338	LIMLLNDIDAAPALPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLAYLGGAGQLRLPPDGVDKSAMEVLFDTLLLTQESESVLFYSVAGLYNLSNDASFAQMAATKKGVLAKLHSLAESANPDTVKYASGTVDNWRKHHSGAWPPQ
Ga0228590_109420	Ga0228590_1094201	F008291	RSATRRAAEANGLRMANIPDLRSVQIASASLANDVNNLRRAVAKVEVIPEEDAKVWSFQGASGRRVLVDRRAPAPMPYGNARYTASSWKVGARSTEVHPITGQHTYDTGNLYRTVHWKDEGFGLNGRFTDAIALAGMWRNDGLNTAATRSKAVSDPTGWGTPKDNISFM
Ga0228590_109964	Ga0228590_1099641	F007922	GAAAATYTFEQMKEQFSRADKSGKGLAGPAANAELVLYEFLNVVTRVSFYRLNPEFGELTMEHQESLLPVPQCLEQTLRECILLKAHRDDAAEFRVKTMQMPEVVQALNEARPRLQAWYASIPLDDNQKVGMSQWIGALEKLNVIGTFTCMQGSDIVGDDRVGTEFKCRLSVPQAKAAFVNGQKEVGGGEDVSLDFEELLECIARCGVDKY
Ga0228590_110029	Ga0228590_1100291	F086559	NNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ
Ga0228590_111630	Ga0228590_1116301	F046205	ACKTKYMWRLSMPQIKMAFVDSQPQDSLQAAQSSANDESNVLDFDEFLECLARCGIDKYRAVKEVSPARAVKGFIQNLLNEMSADSVVVEATYIHAERYDAEKETKPLKGESQKDLEKWLACWERMEIMDVHLWPTWEKEVHDILHPLFKELQLIFLAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLE