3300031153: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_0mM_3 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031153
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0267090 | Ga0228569
• Sample Name: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_0mM_3 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 18637704
• Sequencing Scaffolds: 16
• Novel Protein Genes: 22
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	11
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007565	Metagenome / Metatranscriptome	348	Y
F008473	Metagenome / Metatranscriptome	332	Y
F009117	Metagenome / Metatranscriptome	322	Y
F013862	Metagenome / Metatranscriptome	267	Y
F024462	Metagenome / Metatranscriptome	205	Y
F039966	Metagenome / Metatranscriptome	162	N
F046205	Metagenome / Metatranscriptome	151	Y
F066385	Metagenome / Metatranscriptome	126	N
F069666	Metagenome / Metatranscriptome	123	Y
F074505	Metagenome / Metatranscriptome	119	N
F074888	Metagenome / Metatranscriptome	119	Y
F076927	Metagenome / Metatranscriptome	117	Y
F079587	Metagenome / Metatranscriptome	115	N
F080775	Metagenome / Metatranscriptome	114	N
F082271	Metagenome / Metatranscriptome	113	N
F086389	Metagenome / Metatranscriptome	110	Y
F088418	Metagenome / Metatranscriptome	109	N
F093418	Metagenome / Metatranscriptome	106	Y
F102393	Metagenome / Metatranscriptome	101	N
F102720	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228569_103627	Not Available	1063
Ga0228569_104298	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	984
Ga0228569_104758	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	933
Ga0228569_105236	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	888
Ga0228569_105838	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	838
Ga0228569_106395	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	801
Ga0228569_107134	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	754
Ga0228569_107701	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	722
Ga0228569_107777	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	717
Ga0228569_108070	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	702
Ga0228569_108425	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	683
Ga0228569_109076	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	651
Ga0228569_109791	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	621
Ga0228569_111647	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	556
Ga0228569_111783	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	552
Ga0228569_112627	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	527

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228569_102537	Ga0228569_1025371	F079587	KSTEFWTVLEFWTVLDFSRTSEHTPSIRSSSQSTMLSTLALATMIPTAFISIDTSPFFYNDLMAVQAMMRPPPSSSWRCTDEECMMSYPVSHLEDASLRLVLGDDGKTITLSGERKIEGCQCQPRDDVIITLPFTPSAPEALSSSIDKGRLTITLSKHAKIPEAKTILIKRQEPKTADASQIRFVPQESASASVVEEKMLDAFDKFRAVAALARKDGQETPAQASNASETVNVTAQA
Ga0228569_103627	Ga0228569_1036271	F009117	EKVAAMIANILGDLNEDQVITAATYITAERYTPAAAPPKGVSPEVHREWLMTWEMLQLSALPGFPLWEKDVHDVLAGNLESLTSIFRAYAASSLEGSATEMDMEEFHDFVIEAGLITDMYSFDTMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRLGKDQKNADKFGEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALGAQLEKLSQFYELVSAGRPFLELDQWLKTLEGKLLFSDIMVDGYVVRLTEPQARAAFYASAATPSSGLLPDELPVCVARTACDKYKGVTPMGPGAKVTGFLANLLGDDDEEDVVLAATGGKALKD
Ga0228569_104298	Ga0228569_1042981	F102393	MMLCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNDAAEQLTKFTLLCSCASAWLYKSEPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK
Ga0228569_104398	Ga0228569_1043981	F086389	IIEENQALDKYVKAHPNLTKTQMRDLFDKRPDFVKCFDASPEELMRIGRAPALRLMLEQSKDLKAALDQKEDVRKILESKPDLTRIELNELVHTNAALKDLYDSRPELKELLQQRARLFEEERKALEDQKADAFIAGPCVKVSALYLKKEGVLVTIALPESMVRHMRFEFSSVRPGTTNVLAQHQGRSVVAFELRLEDLLNMQAAGQFVLEQGKLKLNVDKTLLFLNEKMRF
Ga0228569_104758	Ga0228569_1047581	F066385	KPEPAFTYIMATTAIRELQMAALPAAVGTVAILYSNLANMFAMGKFRYANKGVEVHPYKPWSDTTPNAEEHFRAYKAFENGMEWTVLAVPALWLYVLYTPAVPHVGKFLPWTGALLAAAFAYYNTKYLEGYAQSVEARLPPFKARTNALMVLFTGALASMAASFLTTIGIVKMITPKVCERM
Ga0228569_104784	Ga0228569_1047841	F007565	RLPRPLTLARALRRTMGTSAGFFGITYQGATNGLASVTLSIFNCDHPDDVAWCKHVFDYSTNNSGFLTKAKVPDFLRLFYRNRPQGNTLSGTYLYSYPENEKEFIDALFGKDGQLTFATLIEALKEAQGRFAEPAAPLEYGSAAVLRNDKTKHTRCVLNPQQRFRKPIATSQEVGWELYKEVKPELVASFNDTGGPGTPFRLRTSATTQFADAIEKITWGRSIGGEFSAYATRKLVAFGGQGMGV
Ga0228569_105236	Ga0228569_1052361	F074505	VKILIRKRRISCVPFFLRGGTGRRCRAPWRLQTRSGRPVRASRRRPWSMPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQPHPQRTRRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLRRGALCILACVVQGILCA
Ga0228569_105838	Ga0228569_1058381	F039966	MTEGQERVRLRAREGEAVEWTRRVAQRASTLKDMMDDAPTEGGVYPVPTIAAAELAVLREMCEADSMPARLAQCSISELFRLVEGASFLDAPGALNHAQRALASRLNGKRADELTELLGATDGFGSAEERVAALAEPAFSPEGQLSEAMVGSAGGAPALLQPQPSLSGMAVTDDAKEVALGMVDVVTLAELKGVNRSWLALARRVLCSRLSRCEGQPAPTQMAEITDLNIKVLVDAGRPWEAAA
Ga0228569_106395	Ga0228569_1063951	F008473	AKERASVMLEKEYGVSMDELKLAFEYMKQRVEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWYINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVM
Ga0228569_107134	Ga0228569_1071341	F013862	SDPKSGTSGDKKAGEPPAADVSILGAFLSLDFWLMLIPKTVTFTYTQFFMNYLPQLLHTSYGFDHGMAATLGGVAQGGSVIGLLGVGEYYKRLTKSSKALLVLVELLLCALVPFVLSLGPSVLPQLAVVPLTVLWGLAYALPFYIPPGEFAMQIGGKKGTALFTNIFDASGFAASALWNPWASALAKNNDFKTILYSQALFGAISSLTMPLCMYRQMLKEQAAKKKE
Ga0228569_107346	Ga0228569_1073461	F102720	KRDDSALFKERLAGDKAMLSALATYEKRLKEWFDVHTQSMFLRGEGRKLQYQQWQDLLKKGWGADARAQGYTPGNGVGNWEIFQDSEITGDERCRNKFKISLSLPQAKFAFINSQSLDQLTVGQAKDTDAMTTLEFDEFKECIARCALDKYKPIRQMSAAVMITSFCKNLLGEENTEECMNTATLIKAERYNWKRYSQTLPGQSLKEHKKWLEVWQRLEISDMYYFPLWEKGVHDILQKHFAELTL
Ga0228569_107701	Ga0228569_1077011	F074888	SPVSSSASSFEQSLPASRHAYSYLGRQAQREAISTLPKEVLYDFELLRQFELSGQSHTSEAQCELIQRLFPRLSASQVAKLQERRVWSAPWQLGSSYLGAPDVVVTAEKAREWQRMFDHATAFCEELFGEKVNMDGVRPSTMTCLALETLPLPVYDIMAM
Ga0228569_107777	Ga0228569_1077771	F082271	FRGDGMRKAWNGWLGLLHDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRSTLSSLSPATRSMRKAINSWIEYVNALQSVRRATAALRMREERVAFSTWHEHVCSDGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVMMQRRSMVVAVASLIRGEQLWGLRVWSAHAALVRKQRERVEETARRAIKSMSLQSLRAAMNT
Ga0228569_107848	Ga0228569_1078481	F093418	MEMAEFHDFIDECGLETKQVNFDLMTNNFIKANATNSGAVRDQHAESRRTSATKQDGRTTEVVAKVKGTNDGQEAKKDQELVLYEFIGLLVRIAFQRANPTFGNYGNKKAVVHLCNYPGSGMHDNGCLQTMIEDEILPRARKDTSAVFRETVMTELSVLKVLDEYRPKLKTWYNEATSDDSKQTDITDKLSMEQWMRVCDEKDLVGIWQCYRESDITGDPACKTEYKWRLSMPQVKM
Ga0228569_107941	Ga0228569_1079411	F024462	LTYELGLRKDIFANQGKDEDGDGRADVVDLDGDGDIYEEDRAKFDTYVPAAPGIDPYVAHSCKTPKPTSLDCYRATDMDVPTAKDVRLHSKFMPGYSGYIPNELRVKTEGGQWSPPKWLNVANKEGPKPYANLGANAPPSIFGPPRSVVFSRDGVFVEGGPAMRKAGMNLI
Ga0228569_108070	Ga0228569_1080701	F080775	GEHLLHVLNTISSRKLVLEAELKEIDEDIASNESMSRKYGAEFFTEGAARLAQSRAEKQQKLAEIKQQLAETSTSVRQWKQLLGALAENYGNMAPPTYINPEGGQLYTQQFVTTRGDSPARVLTTSPILADRRG
Ga0228569_108425	Ga0228569_1084251	F069666	QRVLCSRLCRRDGQPVPTRLDEITDLDVEQLIEAGRPWEAAIAGRMLPGLARLHGYGYVVDVATVRAANLQNGIGDWRRPSLLDGAAKDALNSCISGEGEPPLRLTIAAVACAGSGVICGIPVQQMREDSVTEIDLFTRGLHVPAAMLVAYLISATSGLKNCNLLKNRFDVELAKKLAKMGMEKGIMLSGMTCDQTEADFSHQSLKPADSILIASDLHFMAALTELT
Ga0228569_109076	Ga0228569_1090761	F102720	FWRANPYHGIHKLATKLIPLPDCLVQMLQEVVLPNAKRDDSAIFKEKLKNDKSMQEALDSCEASLKVWFEVHTQSMFLQGKGRKMKFDQWQELLKKGWGQMQSNNEPQPGFTPPKQVGSWQIYQDSEITGDERCRNIFKVSLSMPQAKFAFIDSQNPDQLGVGQQTADSASTTLEFDEFKECIARCALEKYAPIKQMSPAAQIINFVKNLLGTENT
Ga0228569_109791	Ga0228569_1097912	F076927	MLPCTETSNVPGLNRGLQLAVPSHRRELQTAVSTSAGLTSALADTAVSRIVLASGTYNLIAELSITRSVILEAAAGATVTLNAQASSTSRRRVVNINPGSLGVVQLIGLNITGGYLSSVRALISHRPDGKIADVLASTH
Ga0228569_111647	Ga0228569_1116471	F046205	WECYRQSDVTGDPACKTKYTWRLSMAQVKMAFMDSQPSDSLGVGQSNGNDAMAVLDFDEFLECCARLGIDKYRAVKEVSPAQAVKGFIQNLLNEKTAEEVVIEATYIHVVRYDSARDTRAIKGESQKDLEKWLACWDRMTIMDVHLWPTWEKEVHDLLHPLFKELQLIFLAYTRSISEDSAEDA
Ga0228569_111783	Ga0228569_1117831	F046205	MWRLSMPQIKMAFVDSQPQDSLQAAQSSANDESNVLDFDEFLECLARCGIDKYRAVKEVSPARAVKGFIQNLLNEMSADSVVVEATYIHAERYDAEKETKPLKGESQKDLEKWLACWERMEIMDVHLWPTWEKEVHDILHPLFKELQLIFLAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLE
Ga0228569_112627	Ga0228569_1126271	F088418	SVRLLLVAMLATQHTDFESFANALGGLPNQPPVPMECEPSPSPIDVDTKAIVQQVVNVLLKHSPSPSVHLEVLGRRWLALARNESVTNLTSTLSPAKVPAMNKRDKRALAVLELMPVTRDCPQATIALLMSHASTHRSAADIKVLRRCGAQAVKIAEDGLKQPTSATSKVVSAET