NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300031148

3300031148: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_D6_4mM_3 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300031148 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128781 | Gp0267108 | Ga0228587
Sample NameMetatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_D6_4mM_3 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size24131050
Sequencing Scaffolds20
Novel Protein Genes25
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii10
Not Available3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila2
All Organisms → cellular organisms → Eukaryota3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameChrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
TypeEngineered
TaxonomyEngineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Washington
CoordinatesLat. (o)47.6519Long. (o)-122.3113Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007565Metagenome / Metatranscriptome348Y
F009117Metagenome / Metatranscriptome322Y
F010978Metagenome / Metatranscriptome296Y
F024710Metagenome / Metatranscriptome204Y
F028693Metagenome / Metatranscriptome190Y
F030329Metagenome / Metatranscriptome185Y
F039952Metagenome / Metatranscriptome162N
F039966Metagenome / Metatranscriptome162N
F054536Metagenome / Metatranscriptome139Y
F056250Metagenome / Metatranscriptome137N
F056270Metagenome / Metatranscriptome137Y
F057909Metagenome / Metatranscriptome135Y
F063286Metagenome / Metatranscriptome129Y
F063288Metagenome / Metatranscriptome129Y
F063376Metagenome / Metatranscriptome129Y
F066385Metagenome / Metatranscriptome126N
F069666Metagenome / Metatranscriptome123Y
F074330Metagenome / Metatranscriptome119N
F076927Metagenome / Metatranscriptome117Y
F076965Metagenome / Metatranscriptome117Y
F079587Metagenome / Metatranscriptome115N
F093418Metagenome / Metatranscriptome106Y
F102393Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0228587_101681All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii1846Open in IMG/M
Ga0228587_102456Not Available1575Open in IMG/M
Ga0228587_102839All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila1471Open in IMG/M
Ga0228587_103073Not Available1413Open in IMG/M
Ga0228587_103465All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii1334Open in IMG/M
Ga0228587_105902All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii993Open in IMG/M
Ga0228587_106540All Organisms → cellular organisms → Eukaryota942Open in IMG/M
Ga0228587_106956All Organisms → cellular organisms → Eukaryota911Open in IMG/M
Ga0228587_107086All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii899Open in IMG/M
Ga0228587_107686All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae855Open in IMG/M
Ga0228587_107742All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales851Open in IMG/M
Ga0228587_109816All Organisms → cellular organisms → Eukaryota739Open in IMG/M
Ga0228587_111267All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila673Open in IMG/M
Ga0228587_111875Not Available650Open in IMG/M
Ga0228587_113157All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii607Open in IMG/M
Ga0228587_113336All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii601Open in IMG/M
Ga0228587_113923All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii583Open in IMG/M
Ga0228587_114079All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii579Open in IMG/M
Ga0228587_115160All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii548Open in IMG/M
Ga0228587_116423All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii519Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0228587_101681Ga0228587_1016811F030329LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMCNQFIKANATNSAQVRAQRQDEKRDAQSRGNDEPQWKKKPAAKLKGTSSGEEAKKDQELVLYEFLNMLVRIAFWRANPTFGNFVDKDKDGKKDKEEPTPVAYALSNMLNEIILPRAKRENSAAFRQKEMQDSKLIAVLDSYKPKLKEWYDKKVSDDSEGPRNGIISDKLGFEEWNRVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCKAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIARIACSKYSAIKQMDPAAKVKAFLQNFFGEMSEEDCMRTSTYIRAVRYDLGDSVPLKDESPEEHAAFLAEFKQLDLSGLYGFPLWEAEVHDLLHANFRELASIFRGYCKSLGEGSSDESAKTMDLEEFHDFVIDVGLETKLHTNKAAAPALYVFEQMKEQFTRADKSGKGLAGPAANSELVLYEFLNVITRVSFYRLNPEYGELTMEHQDTLLPVPQCLDKTLRECILPKAHRDDAAEFRAKAMQLPEVQAALQEGRSRLQAWYATIPLDDNQKVGINQWVSTLQALNVIGTFTCTQGSDIVGDDRVGTEFKCRLSVPQAKAA
Ga0228587_102155Ga0228587_1021551F024710EQRSAAKMPCYWAGNSTPSPIFRTNRSGNGVGSSPGINPITPYTTASLDYRASWISGQTVADTKAAMTNPNIQGKLFGEAINNESKAFANSMARPAKPTVLPPPVKVQHYNETSGLERSLPTNVPDHPTAIQVNGLRQERTEHVMCPGHVFGVNSYDARVLCGNWAEERSDKSYNPSDLKASTGNDWWMETTYGEMTKNRSHLVRPPKGSNSDTMYTQKGSAFATGVKEESKSSNAEPCVPEVDDYLKGDHRSASRRPGNYVSYQAGRQHLIAAVGGKINELPFYESTTMAGYQDPAEKVLPNCTVRCDLKYKPPFQIRDPGRDGKSKMLCTVKSNEFACDDPVYNSTQIIGRPVKGKQNTYTVESYRNTWTKSPPEIVAAGLCDTSTYKACFTVPDLSKVDATRKMAGHVGSWH
Ga0228587_102456Ga0228587_1024561F030329LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMSTQFIKANATNTAQVRAQRQDEKRDAQSRGNDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSIPTCKAAFMDSQSTEQLTVGKGDAVSSASVLDFDEWLECIARMAVAKYSAVKQMENSQKVKAFCMNFFGEASEEDCMRQATYIRAVRYDVSESQPLKDETPEEHAAFLAEFKQLDLMGLYGFPLWEAEVHDLLHANFKELASIFRSYCKSLGETATSDSSRTMDMEEFHDFVIDCGLETKLAIMKGAEPAVYTFNQMKECFTKADKSGKGLAGPAANSELVLYEFLNVITRVSFGRINPEYGELTMEHQDTIYPVPFCLEKTLREAILPKAHRDDAAEFR
Ga0228587_102839Ga0228587_1028392F063288LTNLVLPNARHDTYAQEFAETTLPLPEVQAALGAQLEKLSQFYELVSAGRPFLELDQWLKTLEGKLLFSDIMVDGYVVRLTEPQARAAFYASAATPSSGLLPDELPVCVARTACDKYKGVTPMGPGAKVTGFLANLLGDDDEEDVVLAATGGKALKD
Ga0228587_103073Ga0228587_1030731F009117GTFTCTQGSDIVGDDRVGTEFKCRLSVPQCKAAFVNSQKETGGAVDDTTLDFDELLECIARCGCDKYRAVEQIKVGEKVAAMIANILGDLNEDQVITAATYITAERYTPAAAPPKGVSPEVHREWLMTWEMLQLSALPGFPLWEKDVHDVLAGNLESLTSIFRAYAASSLEGSATEMDMEEFHDFVIEAGLITDMYSFDTMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRLGKDQKNADKFGEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALGAQLDKLSSFYELVSAGRAFLEIDQWLNALTEKLLFSDLNIDGYVVRLTEPQAKAAFYASAATPSSGLLPDELPVCVARTACDKYKGVTPMGPGAKVTGFLANLLGDDDEEDVVLVATGGVAKAKPVAKAKRYSADGMLMADEEMRATGISSGTAAMLMPDERDMAHRDKFETK
Ga0228587_103465Ga0228587_1034651F056270RSLLGSDSAEDAMEMEMAEFHDFVSECGLETKLITFDLMSNMFIKANATNSAQVRDQHAESRRSSETKLDHLQKGDQRMTTGRTTEEKGKVKSKSDGTEAKKDAELVLYEFINMLVRIGFQRANPTFGNFGDKKPIKHLPGCLRAMIEDEILPRARKDTSAVFRETVMTELSVLKVLDDYRPKLKAWYTAVTADDTGKGGAGANNPSEVTDKLQLEQWKSICIDPGPHCEQDLVGIWECYRESDITGDPACKTKYMWRLSMPQIKMAFVDSQPQDSLQAAQSSANDESNVLDFDEFLECLARCGIDKYRAVKEVSPARAVKGFIQNLLNEMSADSVVVEATYIHAERYDAEKETKPLKGESQKDLEKWLACWERMEIMDVHLWPTWEKEVHDILHPLFKELQLIFLAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKF
Ga0228587_105902Ga0228587_1059021F069666TDLDVEQLIEAGRPGDAAVAGRMLPGLARLHGYGHVVDVAAVRAADLQCEMVGDWRRPSLLHGAAKDALNSCITGEGEPPLRLTIAAVACAGSGVICGIPVQQLREDSVEVLNLFDRGLHAPAAMLVAYLIPATSVLKNCKLLKNRFDVESAKKLTKMGMEKSIMLSGLTCDRTAANFMNEGLQPADAILIASDLQVVTTLYLSGNNIGTRVPSRSRRR
Ga0228587_106456Ga0228587_1064562F079587EHTPSIRSSSQSTMLSTLALATMIPTAFISIDTSPFFYNDLMAVQAMMRPPPSSSWRCTDEECMMSYPVSHLEDASLRLVLGDDGKTITLSGERKIEGCQCQPRDDVIITLPFTPSAPEALSSSIDKGRLTITLSKHAKIPEAKTILIKRQEPKTADASQIRFVPQESASASVVEEKMLDAFDKFRAVAALARKDGQETPAQASNASETVNVTAQA
Ga0228587_106540Ga0228587_1065401F057909TEKYRQTIRTEMAFAEKFAARAAASLTEEDKARMAELEARGKERRWTHGPDFLFDLGKEATGGVTPYEMKDARETWYSKQRIKKLDGGQRNCGGVVLSSHAVGDNLIGYSDWSKPEFARQPIIRDSFFRSTGVLRDPTPANI
Ga0228587_106811Ga0228587_1068112F007565TMGTSAGFFGITYQGATNGLASVTLSIFNCDHPDDVAWCKHVFDYSTNNSGFLTKAKVPDFLRLFYRNRPQGNTLSGTYLYSYPENEKEFIDALFGKDGQLTFATLIEALKEAQGRFAEPAAPLEYGSAAVLRNDKTKHTRCVLNPQQRFRKPIATSQEVGWELYKEVKPELVASFNDTGGPGTPFRLRTSATTQFADAIEKITWGRSIGGEFSAYATRKLVAFGGQGMGV
Ga0228587_106956Ga0228587_1069561F010978PRESNPLERTSVQLMLVVAGIALFANSAVDRTDDGLPWEVTLAGFCVFAVVFCAIYAKKTEVALSIVTMIAIVMPTYYVHNYEVPASNWELGSMFPLKTSKEEVLRGCFKAAPNASRFDKMLPFDLSLAHFSVLPPGLALRVNTSEIYHSGLKLDDPLTKERTHDYLLFSSPRKVKEKTESLVLLARVPSKFEVWPKNIEDYSFSLQTASNIVAPPTMFGEVTKLDKGPAIEILQRKHHLRPFMLDVYRVEYVYE
Ga0228587_107086Ga0228587_1070861F102393VCSCFFEPPFVGGRHPYWPPASSTRMILCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMVDLTNSDMTGGNMTDVPVMLDPRVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNDAAEQLTKFTLLCSCASAWLYKSEPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK
Ga0228587_107657Ga0228587_1076571F063286ELEEFHDFIKDSKLETRMINFTTMTNVFAKANASDSATVFMERMAGRRNVQVQRELEEIARQAARSAHDGKKGETKFQELPKHLTCDRFSSDYPEPGSMKIKKPDNRLTLTEFLGCLVRIAFLRANPKHGQYDNKAKLVELPGCLKKMLEEVLIPNAKQDMSSLFRDEIAQDAEVQAVFEEYRSKLTFYYQEVNLLTAVKGKIDNKLSMETWMDIARGFLQFTKKKGSKHMEKAKVQTKVGEGAGLPEGAFVGDCTVQRESDITGDERCKEKYTCRLTILEAKYA
Ga0228587_107686Ga0228587_1076861F028693WALCQMTKSASRSQSDIAKIIDLAESRLISTTPGSVPPHFDDGGHLPFGGTIGNTRGPSAFGRRKATRANAIGNPQALLLNFPPQNGPAQLACWERNYKSSIYMDPSAEGERLNTTNWTVGLQGKPTEPSYLALAQQTWGNLRQTACTRPTVAPAFIPPKRDATAEQVAAASYSWKWPEREQRPAAPQIKRPEQLTQSFLEEYEQRPPWLKY
Ga0228587_107742Ga0228587_1077421F054536IAADQVAQEEATTNQQKYGHPHAQAPFGVFPVGTAPGAMDYTATSSKVCPNNQADDPSSLASRIAHRRVARIKRNLNGGLFRPDPYDDSVVDDIASLDPRLKILQTRTEYRSDAAACMQTSAEELFDMRDDGAVYSGANALS
Ga0228587_109816Ga0228587_1098161F063376YPIYNLVPPAGMYGHVEPVIGIQSNHPLNDTTVYDDDVVVHFTDGGVNTVHRPISTLPCKWAGMGKPADCGEYSYGVGNPYGFGWAAKGFTQDPKPYQLAALKIQPWEREPDTRSGEKPEPLAGTLTAYELTPGATYDIYRWDSVKEAFTYTNEYKKITFAATTDTYVYTDDKSFMSEGTTYYRVVKA
Ga0228587_111267Ga0228587_1112671F066385NMFAMGKFRYANKGVEVHPYKPWSDTTPNAEEHFRAYKAFENGMEWTVLAVPALWLYVLYTPAVPHVGKFLPWTGALLAAAFAYYNTKYLEGYAQSVEARLPPFKARTNALMVLFTGALASMAASFLTTIGIVKMITPKVCERM
Ga0228587_111875Ga0228587_1118751F039952ARKAEVADARKFIAMPSEDEEVQELKQMFSSPTKSKKHRSPARKPAWDSTPLRSRPSALVGLRPVTREPWAIDEDVYNRKFEMRDVGVPDRYLDKTARVKENNSKYVDYLCRFDQKYSEMNGGYNRFDGNPFT
Ga0228587_113157Ga0228587_1131571F074330LESAMLNSTSTGFLLVTSTVVLIASLFLTNDPVDTCAVSGGMQYCVGWNNAYAFVWSIMEIVLCAVGLVALKYKPDLLSKVLVAKVPLLYAPITVESLLSFVLFLNATIGALIMTNQPEHGFDQTNNGYFACWAGVCAALGNIGVDAIKNGEDIAKKGVSPAWGIIISSIMVLLQAFPYIVFDTTQMPSGPPRPLWRINPPP
Ga0228587_113336Ga0228587_1133362F076927MAPPPLPCTVLPCTETREVPGLYRGLQLAVPSHRRELQTAVSTSAGLVSALANTAVGRIVLAPGTYVLIAELSVTRSVVLEAAVAGSVVLDAQASSSSPRRVLNINPGSSGVVQVIGLNITGGYVDEGVPGALCSETCNYAIDGLCDDGGPGHEYNY
Ga0228587_113923Ga0228587_1139231F056250DLGLTFPEDYGVIAGFQWLPNLVLLVGLTNGYMVTVDFGALIKLQQSNKLPDRVSAMGTSRVFNEYLQDVSAFYTANVGQRVACCGDTMVKIVHRTGVELEVHLEVDLDRQAKIGHYLDKVDWDDSAKAFACSATDGFLYVHEILD
Ga0228587_114079Ga0228587_1140791F039966AQRASTLKNMMDDAPTEDGVYPLPTIAAAELEMLMEMCEADSMPARLELCSIPELFRLVEGASFLDAPGALNHAQRTLASRLEGKRADELREVLGATDDFGSVEDRLAALAEPAFSPEGQLSLATTGSAGPPALEPQPSLSGVEVTDDAKEAALGMVDVGTLAELKGVSRSWLVLARRVLCSRLGRCEGQPAP
Ga0228587_115160Ga0228587_1151601F076965GPDADTQGARGAKPPCPKMVGEWYLSQESQITGDERTAKKNQMTFKAKLSIPQCRWNFLRSQSVEQVEGGEVDADSSDIATLDFSELLECICRCAVNMYEHMLTTYLPSHNRKAMTMADAVRSWIQNLFFEKSPEMCMWEATVIKADRYDWQKQTKMLPGFSPAQHKLWCQCWENMVLVDIH
Ga0228587_116423Ga0228587_1164231F039966RAARPNIMNDQERVRLRAREGEAVEWTRRVAQRASTLKDMMDDAPTEGGVYPVPTIAAAELAVLREMCEADSMPARLAQCSISELFRLVEGASFLDAPGALNHAQRALATRLNGKRADELRELLGATDDFGSAENRVAALAEPAFSPGGQLSVATVGSAAGPPALQPQPSLS
Ga0228587_116479Ga0228587_1164791F093418ELTLIFLAYCRSLLGSDTAEDAMEMEMSEFHDFVVECGLETKHVSFDLMTNMFIKANATNSAAVRDQHSEGRRSAETKMDHLVGKGDTLATGRTTKVVGKVKGTNDGKEAKKDAELVLYEFMNLLVRIAFQRANPTFGNFGDQKPVKHLPGCLRTMLEDEILPRARKDTSAI

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