Basic Information | |
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IMG/M Taxon OID | 3300031110 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133512 | Gp0324021 | Ga0308165 |
Sample Name | Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLW.R2 |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 835863546 |
Sequencing Scaffolds | 9 |
Novel Protein Genes | 9 |
Associated Families | 4 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 1 |
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria | 2 |
Not Available | 6 |
Ecosystem Assignment (GOLD) | |
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Name | Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States |
Type | Host-Associated |
Taxonomy | Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Unclassified |
Location Information | ||||||||
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Location | USA: California | |||||||
Coordinates | Lat. (o) | 37.8864 | Long. (o) | -122.2981 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F034190 | Metagenome / Metatranscriptome | 175 | Y |
F036230 | Metagenome / Metatranscriptome | 170 | Y |
F041209 | Metagenome / Metatranscriptome | 160 | Y |
F051903 | Metagenome / Metatranscriptome | 143 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0308165_1032606 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 3057 | Open in IMG/M |
Ga0308165_1058458 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria | 1989 | Open in IMG/M |
Ga0308165_1064309 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria | 1854 | Open in IMG/M |
Ga0308165_1071351 | Not Available | 1714 | Open in IMG/M |
Ga0308165_1073154 | Not Available | 1683 | Open in IMG/M |
Ga0308165_1140078 | Not Available | 1024 | Open in IMG/M |
Ga0308165_1163894 | Not Available | 906 | Open in IMG/M |
Ga0308165_1227980 | Not Available | 697 | Open in IMG/M |
Ga0308165_1303852 | Not Available | 556 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0308165_1032606 | Ga0308165_10326066 | F036230 | MTQVNDIVQVNPDRETFGACMVVVTEVKSWGIQGYVQSAGVDGQQYIRLKSGDFEPTGGKAVWVAP |
Ga0308165_1058458 | Ga0308165_10584581 | F041209 | MRRKLQKIATARILFLDETALRLNAAPNHTLVLPGEQPFIETTDTSSYAARYDMIAVCTGVETLLPKVFTPAERKGAEVRGVNSAVLQQFIDDTLAQAVEGLDRYPLTLVLDQASIHKNVDAIRQAFHDRGSQAIKDILLMPPNAAKRMSPLDNALFHDWKEICRQRCPVTKRTIQRVMADAWNKLPARLLHAHYKKCGLVRGQDPYFDCPDPAGHQHAS |
Ga0308165_1064309 | Ga0308165_10643092 | F041209 | VSPGLCDQIASLRRKLQKIASSRIIFLDETALRLSAGPNNTLVLPGEHANVLATETSSYAARYDMIAVCTGSETFLPKVFTPVERRGAQVKGINSAMLLQFIDDTLAQAVEGVNRYPMTLVLDRASIHLNIDAIREAFHDRGSQSIKDILLMPANAAKRMSPLDNALFHDWKELCRKRCPVTKRTIEQVMADSWNRLKPKLLHAHFRHCGLMRGQDPYFDCPDPAGHQHGNRD |
Ga0308165_1071351 | Ga0308165_10713511 | F051903 | MCERHACSCVEQRSLTLSTCALLISVSADMCEQIATVRRKFQRIGTRRILVLDETHRRIGDVTDRTIVLPGEPSTIETSATSHYAPRYDMIACCTSKEVMPPMIYSPKERGRGVDTEMLLQYIRNLLAQSAGALDRYPLFLLLDKATIHNERKIIEIFHDWGCQELVEIIKMPTAAAKRLSPLDNSLFNVFRQRVLHGPPLTRANIKQRMSDAWNSITERDLRPQYRHCGLMRHQNVYFDCPNPAVHRHGS |
Ga0308165_1073154 | Ga0308165_10731541 | F051903 | VRRKLQRIGTQHILFLDETHKRDGDVQNYTIVLEGEAPYIESTNTSSYAPRYDMIACCSGTTALPPVIYDQTERERGVTQQMLLQHIRDLLAQAAGALDVYPLVLVVDRSAIHQPDNMLQEFHDWGCQEMTEVLLMPPAAAKRLSPLDNSLFNLWRQRVLSEGGLTKSNIRRRMSDAWNSITAEDIHAQFRNCGLMRHQDVYFDCPNPAVHKHRS |
Ga0308165_1140078 | Ga0308165_11400781 | F034190 | LNGDWCFINAVLGLMAPSATHPCPICIISSSSFLHSARYRSPGDRHSIHPDQPALLTILPERIVPTPLHLFLGISNRIILDAFSELLGKERVQAALTTITTVHSAGCGGKSDLYDLNGPEISKWIKKECSASVLAAAASSSALPAAITASHSILSRWLQQLHHCLLRSDDWTAADIDAWRSVVSDIHQHWRAEAKSEPFPKLHMLHHAVDFAERHRFLGRASEAQIESFHASFNALFHKQHRNQSGNTEQRLRRSLADATLRAVQPSLNL |
Ga0308165_1163894 | Ga0308165_11638942 | F051903 | PGEPHLIESSCTSKYATRFDMIACCSGKVALPPIIYSPKERAKGIDKAMLLAHIRNVLAQAAGALDTFPLLLVLDRASIHNEEKILQEFHDWGCQELTEVIKMPPAAAKRLSPLDNSLFNVWRQRVLKDGPLTKRNIKARMSDAWNSLTAADIHAQYRHCGLLRHQDVYFDCPSPAVHRHDR |
Ga0308165_1227980 | Ga0308165_12279801 | F034190 | AVLGLMSPSATHPCPICIISSSSFLRSARYRTQRDRHSIHPDQSALLTILPERIVPTPLHLFLGISNRIILDAFSELLGKERVETALKSITTVHSAGCGGKSDLYDLNGPEISKWIKKQCSASVLAAATASSSVPAATTASHSILSRWLQQLHHCLLRSDDWTAADIDAWRSVVSDIHQHWRAEAKSEPFPKLHMLHHAVDFAERHRFLGRASEAQIESFHASFNALFHKQH |
Ga0308165_1303852 | Ga0308165_13038521 | F051903 | GDVDSYSIFLPGQPPLIESSSTSRYAARYDMIACCSGKAVLPPVIYAPKERQRGIDTAMLLSHIRDLLAQAAGALDEYPLLLVLDRASIHHEDKILQEFHDWGCQELTEVIKMPPAAAKRLSPLDNSLFNLWRQRVLADGALTKSNIKQRMSDAWNSITSAQLCAQYRNCGLLRHQDVYFDCPD |
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