3300031087: Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLF.R2

Overview

Basic Information

• IMG/M Taxon OID: 3300031087
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133512 | Gp0324017 | Ga0308161
• Sample Name: Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLF.R2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 762496494
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Grewioideae → Apeibeae → Corchorus → Corchorus olitorius	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 37.8864
  • Long. (^o): -122.2981
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009686	Metagenome / Metatranscriptome	314	Y
F057078	Metagenome / Metatranscriptome	136	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0308161_1000030	Not Available	443077
Ga0308161_1023897	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Grewioideae → Apeibeae → Corchorus → Corchorus olitorius	4000
Ga0308161_1026646	All Organisms → Viruses → Predicted Viral	3710

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0308161_1000030	Ga0308161_1000030326	F009686	MTEREMFESSFKRPTDYFKRSSQSQWNIDSDLGILDWTGSDLSEEDMIRFKAHYEK
Ga0308161_1023897	Ga0308161_10238973	F009686	MTEREMFEASFKRPTDYFKRSSQSQWSIDADLGILDWRGSDLSEEDLTRFHAHYDK
Ga0308161_1026646	Ga0308161_10266465	F057078	MAIKKATTTDDLNKEETPKTEGYTTLVGPSGVETSVPDSILEALLDSGYKKK