3300031025: Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_12SEP2016_LR1 (Metagenome Metatranscriptome) (pilot)

Overview

Basic Information

• IMG/M Taxon OID: 3300031025
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128851 | Gp0242470 | Ga0214505
• Sample Name: Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_12SEP2016_LR1 (Metagenome Metatranscriptome) (pilot)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5420767
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026180	Metagenome / Metatranscriptome	198	Y
F086473	Metagenome / Metatranscriptome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0214505_103032	Not Available	538
Ga0214505_103549	Not Available	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0214505_103032	Ga0214505_1030321	F086473	VASTFKNLTSTTTHRDLSKFINIDGVSQEVMISNTTPSVVLILITESKQANPIKLASDRQSLDFYRSYKLSNYSNSGLVF
Ga0214505_103549	Ga0214505_1035491	F026180	SCPVHPTARHSAADCREIQKLVKRVSGRREQSSKNGSPPPRQRAGKEKASDSRAAAGEKELGYQSPARELKGVYHNDDSDSDNGDRRKKLYVMYGGSWELVSRRDVKTLRREVLSVKPGVPRAAPHQRWMNTIISFGPSDCPENMAGAGVLPLVTAPVISNVRLYH