3300031001: Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 5 (Eukaryote Community Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031001
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0068071 | Gp0115370 | Ga0074017
• Sample Name: Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 5 (Eukaryote Community Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 149417677
• Sequencing Scaffolds: 9
• Novel Protein Genes: 11
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → forest floor → wood
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Sweden: Dalarna County
• Coordinates
  • Lat. (^o): 60.97
  • Long. (^o): 15.87
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008027	Metagenome / Metatranscriptome	340	Y
F014218	Metagenome / Metatranscriptome	264	Y
F022330	Metagenome / Metatranscriptome	214	Y
F033676	Metagenome / Metatranscriptome	176	N
F033678	Metagenome / Metatranscriptome	176	N
F033679	Metagenome / Metatranscriptome	176	N
F044225	Metagenome / Metatranscriptome	154	Y
F052339	Metagenome / Metatranscriptome	142	N
F079432	Metagenome / Metatranscriptome	115	Y
F079514	Metagenome / Metatranscriptome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0074017_1001109	Not Available	592
Ga0074017_1003573	Not Available	707
Ga0074017_1323521	Not Available	590
Ga0074017_1325582	Not Available	608
Ga0074017_1360209	Not Available	500
Ga0074017_1363771	Not Available	586
Ga0074017_1367430	Not Available	503
Ga0074017_1394950	Not Available	632
Ga0074017_1396938	All Organisms → cellular organisms → Eukaryota → Opisthokonta	1027

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0074017_1001109	Ga0074017_10011091	F079432	GSTTKMINRNFFNLVNSFSSRTPMIAMRVLNRPAASFSSFLNANDSSVLEPEERPNYYNCYDDDEIFETPTPERNFDSSIETENRQTTPSEEPSSGVFNSTFDDEVL
Ga0074017_1003573	Ga0074017_10035731	F044225	DYIHDKVDELVDGVKSKVGLAGEAVKHKKEELSEEARHAAAVAAEEARHAAKEATLGDHTGTAKEKLHDAKRDLKQKAAKFADDHL
Ga0074017_1323521	Ga0074017_13235211	F033676	DKDYEWLIFDDLRLCMDEKLLPEQIKLHFENYTDLSVRSEDPSTSTTRVSFSVANLKPKFENFYFSMKKISTPAIQDEGRMSARVKGSGLSIRGRFVLSRDPKTGAILSDHKINVHIDRLQIDILQAKHDVLLTLGTMFFGNYIKQKTEEVVKEALTTTILGYGDVLNAQVFSKLPTMEGLAQQGIEAVKSGIPV
Ga0074017_1325582	Ga0074017_13255821	F033679	SLVILAVFAAIVSAQTKPNWPPQFSSSVFVRGWGPRDSREDHFFRWFYDSVKNKDRLDGEQRWLGERYRAVTIYDHAAKLEWHVYHQEGLVSCYYGKLNHSLPRPNFNNARFIGKAELNYRVVDHWEERDQTNRVVSQIYDRADNQKIVRIDLADPRGAITWDFHEIDNAPIDADLFDIPADIKAVCNPF
Ga0074017_1360209	Ga0074017_13602091	F008027	RLAMPHGIKILVANYGGKDVTNIAKQQHKSNAHFVASNSYFGDPMPGTPKFLHVIYSFHGVLGSVSIPENQQFHPHPPKLVILGALYGSADVTEKVKGLVPYGADHGHFQVENAHFGDPNPGIFKNFSIAYVRNGELKQVAAKEHDSIHLN
Ga0074017_1363771	Ga0074017_13637711	F022330	MNFDYQITRRILLLLDGGEVHLHFVVHDQDEGSTSTSEDVGESSLEEGLATFILVDLGETVKSTVVQDFLSTRLHHQSSSNGIEGIRKETRERSNDLGNEELEEDGGLGVRQEGSLGSIVTTEIAGSVGYDTEDGDTESLVESLNTIN
Ga0074017_1367430	Ga0074017_13674301	F079514	IALAVAGLIGLAAGFTLRPALAGLFFFVLAAAWLCSLALLIINACFLNRNMNSQCARTGNAQLSSGCENIRMYHTILYTVFGPLVGLFVPTLLVAAGYLWRTTSLYRKQEYDAYANQAGPVPVGSSRM
Ga0074017_1381260	Ga0074017_13812601	F052339	YHYHSHTMGILKKLFNKKKGTESVSLTEECGYYEFEVQQWTKFGNLVKNKNSELRTLIINPEGISVINMHSREVILTIPFFDMKWFELHPAKSQWLVKIAGEDKGVIYFSSRQAAAIHKIAVKCLKTLIRTRRLRLQEHSQSPDLRSVMADMYDDCQDKIDLDVIAPDSPQLKKLNFQAMASPLRPVC
Ga0074017_1394950	Ga0074017_13949501	F033678	AVFAAVALAQSAKPTWPAEFSASIFSRGWGPRGDDRDHHFRWFFSTSRNASRIDGIQHWLGESYWASTIFDHRNDVEWHVFHQGGLAVCFYSKLNHTMITPNFTRAIYIGKAEIDYRVVDQWLERDERGQNVLRVYDRVDNQKIVRMDISEHERNSRRERARSFQFHELDVAPQDPDLFNLPQQIKVICNPLPSIQNHHQY
Ga0074017_1396938	Ga0074017_13969382	F014218	MGLETMDLDGLGVKLQTLLLVGEELLNIFALITLKLDHLSHLTIDHDGAIA
Ga0074017_1398579	Ga0074017_13985791	F052339	TPPLASMGILKKLFNNKKKSASESMSLTEESGYYEFEVKQWTKFGQTMRDKSSEIRMLIINPEGISVVNVYSKETILSIPFFDMKWFELHPAKNEWLVKTAGEDKGIVYFSSKDAAAIHKVAVKALKTLIRSRRLRLNEASTDNTDIRSVIAEMADDCEDKIDLDVLAPDSPQLRKLNFAAKSSPMGRAQA