3300030753: Agave microbial communities from Guanajuato, Mexico - At.Am.e (v2)

Overview

Basic Information

• IMG/M Taxon OID: 3300030753
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053055 | Gp0104152 | Ga0268248
• Sample Name: Agave microbial communities from Guanajuato, Mexico - At.Am.e (v2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 66113247
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Agave Microbial Communities From California, Usa, And Mexico
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant surface

Location Information

• Location: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 21.7658
  • Long. (^o): -100.163
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003605	Metagenome / Metatranscriptome	477	Y
F004469	Metagenome	437	Y
F033622	Metagenome	177	Y
F044772	Metagenome	154	Y
F066299	Metagenome	126	Y
F087839	Metagenome	110	Y
F096299	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0268248_108112	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	715
Ga0268248_110003	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	621
Ga0268248_113422	Not Available	524
Ga0268248_113736	Not Available	518
Ga0268248_113760	Not Available	517
Ga0268248_114646	Not Available	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0268248_108112	Ga0268248_1081121	F044772	HNFFGILERYNPRTGTFFTPVGEMGLALHELYEVSGLSSGDIPYEEFVPTTRELRLLEKESPQVYETYWEVMCHFYICGQTTAWRSGGVKQLSWADYLFNNVSNKDLPVIRLAPSSGGEVEDRIDAVSDKFYTTESNEDGFDPDLVFESFHHQARTPISDQALLAGFLMLWLKRCVVPTLPHEVIVADVVYPAVLLAHGHPIALLPAVVAGIQSGLRVLTKSFCEPPKTANSRGEPY
Ga0268248_110003	Ga0268248_1100032	F003605	MAVGDDATAAGYPLVPDTGENGRVRWGAREINFTRDLVAQLKKLLPGSKAAFRTNAGISSGTPPPSGGDDGDIYFQIL
Ga0268248_111077	Ga0268248_1110771	F033622	HFHICGQISKWRSQGVKQLSWASYLFNNVNTKDHRITRLDPSSAKEIEDRIDQAPDSFYTTESNEDGFDPDLVFESFHHQARTPISDRALLAGFLMLWLKRCVVPTLPHEVIVADVVYPAVLLAHGNPIALLPAVAAGIQSGLRALTKNFCEPPKTADSEGKPYVDSEGNPTVKRPNPRVELPYTYLIAWYVMH
Ga0268248_113422	Ga0268248_1134221	F066299	PEQPDSGNEADTEPEKEECLWELEPLVTGTNKPNVDNTTDDVGGWYINEDLDSAYFSVCASDSIPSDTSTDIDDDPWSAVDALTSLHVPVKSSFETYRDNGNAQESIFMVPARRKGQKPILFGRISSEPMPREDSESEEESPQLSHYEPKAFKMMKCMGYDLTNRPGLNFGKGR
Ga0268248_113736	Ga0268248_1137361	F087839	LSDSILLPDSIMTPVSSPDFNLFPESTLDPVPIHNEIESPIFDDHHIELDQFHTFESPIDKLASSHFYEIELNEKCDLDSQFCDLVQITESILTPVLLPDLSNILESVLIPTPVILELESPILSHIPLWENQCGLEFQLLDLDPLPEPISTPEPLLDLSHFPESVLVPVLSK
Ga0268248_113760	Ga0268248_1137601	F004469	MSLYLKALGIHVYFATTKDSYCLNDKNFEANAKALHALKSTLNDEYLSRVSNIDSVFVAWNIITSLGEKDLYYAGSNSDVGSNTSNVCYMVQGVNPLEVTTESEVDG
Ga0268248_114646	Ga0268248_1146462	F096299	MPTSRVVDPSPTTGVLSSKVLIAESACVELSSSSSKEHGYYSGEEVDFGDEPALPDTSKFSHISEEEIQGCDPVTTSPIVIIAATKGTFLVFLNRLLLKLGKGYDIYF