3300030719: Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - UN-2 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300030719
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0135150 | Gp0323847 | Ga0307926
• Sample Name: Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - UN-2 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 51523379
• Sequencing Scaffolds: 6
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium B3_Pla	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Risofladan, Vaasa, Finland
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → land → soil
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036088	Metagenome / Metatranscriptome	170	Y
F037999	Metagenome / Metatranscriptome	167	Y
F057772	Metagenome / Metatranscriptome	136	Y
F059653	Metagenome / Metatranscriptome	133	Y
F069660	Metagenome / Metatranscriptome	123	Y
F088271	Metagenome / Metatranscriptome	109	Y
F091298	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0307926_102168	Not Available	2268
Ga0307926_102347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2185
Ga0307926_104380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1608
Ga0307926_126526	Not Available	578
Ga0307926_131958	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	516
Ga0307926_132950	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium B3_Pla	508

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307926_102168	Ga0307926_1021681	F059653	MNNKEALQSQTEYSNDNLLEKLLLDRGLDAGGTYAAANAKDIDLAAASLYFTLAAHPDLREGSFAVKYNGAQLIALAKTILRKYDLETMPT
Ga0307926_102347	Ga0307926_1023473	F091298	ELAVYDSGWGMSSAAKLRVASSAQVLEYLSIGEPVQDTRVTGLLDLDPLVVSRWLCGEDLRGIYQPIVVRHSVLDGLDLEGRTFYEIVELVGCHVATAHFKHAYFYSSLLVEDCVFEGDFDGRGMQSDGRVVFHNTVFAGWADFSALSVRGRADLVDVSFPGGTNLLRILANGSHALLGREVNLSGCRFRPADIPAGLEATRCGILPFGERSPGGAERQWGELVGREEGDPVDVVGGPLFASHQSGTVDDDDVRTALVLASGCDVK
Ga0307926_104279	Ga0307926_1042791	F057772	MPLLYQRPGTKRLASGAEAGAAVLHQDPLDGAAADGAGFASPMSNLKIEMSCAQLALGADVGIHTGAFATDGCPENSADALI
Ga0307926_104380	Ga0307926_1043803	F091298	LMLSAAMLRVTSPMQVLQYLSIGESIQDTRVTGLLDLDPLVVSRWLCGEDMRGIYQPVVLRHCILDGLDLEGRTCYEMVELVDCTVSTAHFKQAYFYSSLLIEACIFGGDFEGRGIQSDGRVVVHNTIFNGWADFSGIHLRGRADLMNVSFPGGTNLLYVLANGAHKSLGRDIQFNGCRFRAADVPTDLDVARLGITPLGQGDLSGLEG
Ga0307926_116208	Ga0307926_1162081	F037999	TLGAVLENVLSPEAAPDLFVFGKFNEMPMAERVKLMMTDPAELIDYVRRESHVVWKAVEAFIRRENDEGRDALIEGVAVLPELMSQLGNIPHRVVFIGNQGDNHKENIKKSAEENEHDWMRDVSDQYIGAFAMFVKRMSAYVEQEAKKYGFEYIEMDKELFGDVTEAVVKSLGLSAR
Ga0307926_126526	Ga0307926_1265261	F069660	RQMTAILKLLGLIGGIVPIILTLITAFETPGFGAEKKKVILDAINLFYDKVAEGNVMPITKEKLSGIASGFIDIAVAFFNLVGWFKHNSPTVST
Ga0307926_131958	Ga0307926_1319582	F088271	MEKAEIKRIADYIKDLEEGLVEWDYRGITTQGHLTKLYGIIERLMKATYETKDQELKPLLATLEMKARKCKQCIEARTGVRN
Ga0307926_132950	Ga0307926_1329501	F036088	MGLVGLAFLGVVLGAAGTEFLRAKRPDIIEKIEDAARRFVDSVCPSESNDEKTQ