3300030705: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 17_T1F_8DEL1 developmental time series (Eukaryote Community Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300030705
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128996 | Gp0213234 | Ga0187742
• Sample Name: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 17_T1F_8DEL1 developmental time series (Eukaryote Community Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 104377238
• Sequencing Scaffolds: 26
• Novel Protein Genes: 31
• Associated Families: 30

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	8
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	1
Not Available	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456	2
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 40.7982
  • Long. (^o): -77.8599
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000023	Metagenome / Metatranscriptome	5736	Y
F000241	Metagenome / Metatranscriptome	1481	Y
F001767	Metagenome / Metatranscriptome	638	Y
F002609	Metagenome / Metatranscriptome	543	Y
F003026	Metagenome / Metatranscriptome	512	Y
F003183	Metatranscriptome	502	Y
F004604	Metagenome / Metatranscriptome	431	Y
F004725	Metagenome / Metatranscriptome	426	Y
F005748	Metatranscriptome	391	Y
F010767	Metagenome / Metatranscriptome	299	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0187742_1000213	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	1232
Ga0187742_1004286	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	522
Ga0187742_1004527	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	537
Ga0187742_1005562	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	609
Ga0187742_1007539	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	904
Ga0187742_1008448	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	966
Ga0187742_1026727	All Organisms → Viruses → Predicted Viral	1086
Ga0187742_1032076	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	602
Ga0187742_1044367	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	882
Ga0187742_1046488	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	584

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187742_1000213	Ga0187742_10002131	F000023	LAEPWVIMGSEMEAKLQELEARLAALESAGAGGEDGVLPSRKTGGDAQIMKKVATRLQDFESQITAQLANLQTDFDKKLSHVNRGAAATKPVDGAGGAAGLDTMAEDLDQLKYDVGELKDLLGNNKGEVNHIRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKNEMNTKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNDIRQKQQEAFEKIGAVEQQAELRSAEASRRLGALDLRMSGVQG
Ga0187742_1004286	Ga0187742_10042861	F048326	TLWALLAPLSSAAKYIIGQEERAGAYEVVFDEEKTALDLSKDCYPGKVCPPVVIMVGRQVGTIEVSNCHEGVMYTFVNKGDLDAGVVVQHEGGLYGSKGIPQFGVGTCFCYREGNLMCG
Ga0187742_1004527	Ga0187742_10045271	F005748	SLLVLPWKALPMALALLPTAFVLPAAYRMIFQNSMRHTTASVFTVILYLVLSFMPVPCFENLFSELAFYGIALVSTFFMYTFFPEVLLNDFMFMHYLALFTIPLIPLAFAYMPMFAARSYLFL
Ga0187742_1005562	Ga0187742_10055621	F074902	PKLPFPGMPPPPNLDSESLAQMRFQQVASEYEQIKSAGIDPQVAELAEYHGLDDRATRALDEEMKKRKDSFESDLQALWVGLEGSKNPSGMLMMKLKDMRMGTFKGMTALNKKIQDFAKRNRLDAQAAVKLAEVMENRDDVDGDLMKLAKHLERSNKPSSLVMMMLRDLREGKPVKDPEYAAAIGSKVHERELRQSMKERDR
Ga0187742_1007539	Ga0187742_10075391	F093247	SSNMNESAPPLLQGGGILGRFENVRVKKSAKKTVTCDAATPEYLRHDFLKPQHLPIERVDEEANFIATSNINETRFHKGFHRRHQADIQQDAARLEHEAARDWARQERAAAQASAAHHLRDKCTFNILTGEGVGRECEFRHVGKKILNPYGSMQATFSEHDREERHRVKNSKHRFFEHPAPEKQVRAANLFNEGLQTTVRESAVLGYGRGGVSRTRARSCGVADNFAHLQALPPEPEYEAPHNGNASQIILG
Ga0187742_1008448	Ga0187742_10084481	F002609	ADFVSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWIPRRIKHNAFVLGLWTCVWLLGTYPLGRPLTEGWRFMFTVSFFARIGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGK
Ga0187742_1009115	Ga0187742_10091151	F085734	RISDFESQVASQIQTLTQDVDKKVSFLGSRRPGGEEVPGVESLARDVDAVKYDVGELKDLLNGAKHDTDHVKRIVLACERDMEDFTAAMDAVNVDLDEMRARVDSTHSIITSRQRVEATVTAEISTMRLDMGDMQEALKAHDAWMEDVSQSLQEAHERCQQIGLDINDVNQQMQVKLDAKTDIVSWNDMNDDIDASIRTVRDMASSLRFEVDNRRRRVDEELARLRSEMTSMDERVMAKTGDIQRQADEKHAAVSGRLEEGAQHRRELQATLGRHAETHNLIQGQINGQRDELDTRSG
Ga0187742_1021148	Ga0187742_10211481	F000241	VYSLASFCFVGSPQTPRDCSRVPARVSAEYLERCGPKDSDVPFNAGAASGAGATVEFKKRPFGILRYQPGEGMKGAMAMEIIPKSRYPGDPQGQAFASGVQSGWVVQSINGMNVQNEDFGKIMDMLDDEVADPRFSKSTALALEKQGGRMAEPVEAPLSVVFSSIPGYVYKGAQLTEDGQDGFAR
Ga0187742_1026727	Ga0187742_10267271	F074386	VMKAHPIMLNENGTVSSVGRLWQLNGWLEDEKVEFKEAPSKEVMQYARSVVWSKVSSERMEAWTKQMKAMGYAGSSNNPLARGVEGCCPGTSDAHAKLVVDDENKDKAELKLLNDLIAKWRVPGVIKVAPRKVIPDFSNRGHTGLSVEHVHYLATSFKEKGFQKRKGNEGHDIPVLVCEKTSSELGQKSIENWRSKLNDEKGFAPQEHYERLFRGEELYTSLGNGHFNQALNLFFRECPSIYSQEKYTIGQDRDLKEAVYQGVGAIVLKAEIPLRDRETISKLLNSKREFKWNVHPDGTLDITDAFEDTRTCKQFEALSKVLDAVELNCLVRSELGVRDSHRVGQ
Ga0187742_1032076	Ga0187742_10320761	F003026	FARIGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGK
Ga0187742_1044367	Ga0187742_10443671	F097378	EELLSLMGGKDHGALPFPTAAGYGMLALNGAKGGATKYLTLQYLNYARWTAQQHSCSMIEALRIMGRTHLISVDGTWTPLGFAKYWRPAVTLLNETVHWGMKVPAAMLLFQQFRDLGFGPHGGLFTAVALSTAGEVAATGWSERFGVHMGLQQQISSYRESFSISRQARQGILAGAWAGAAGLWVRNFSWNFAFFEWKRFLHNAVDNSPANAPAWFEAHLNWLRSLEKKNQANVLTFEAATLGTYLTFFNMAGDNVKTKMQVDPARYPSFSLTVRDIWHKHGLLGFTRGSLFK
Ga0187742_1046488	Ga0187742_10464881	F004725	LKARLWKSRSQTDLLQFSVAIVPMATSAPLLGKAAHSKASIFYGADEYLEELKKKYEHDHEIAALKNALPGEGDPNAAGVAQSNDKMLSVQKNDENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFCTQVLMVIGYCAALATFPDYWWTCTLCFGVPFSYIAIQNIYIDHDVMHGATFP
Ga0187742_1052833	Ga0187742_10528331	F001767	RLSRFTCLRKFGISDSGMATRAPLLGEKKQAHSKASIFYGADEYLEELKKKYAHDHEIAAMKNLLPGEGDPNAAGVAESKDKMLKVEKNNENRSLKTNRLFPTPNKPDPMPHNLAFLFTKITPEQMMYMWNVLTFIFLTQCAMIVAYCAALAMFPGMWWTCTLCFGIPFSYVAIQNIYIDHDVMHGATFPVYEFQKFLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWSSNWYKYILTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGPGGKCNKEFWSKWVPRRVKHNSFVLCLWALVWLLGTYPLGRPLSEGWRFVFTVSFFARVGFSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNIMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGSRAL
Ga0187742_1059831	Ga0187742_10598311	F018723	AWALRPLRRAREGHGAMTAEKTGDGKGNPAAKKGGKEPFVQQFELKDVYPHFCDRKTKLLPLADVPYVLRAMGLTIYSEEEKSIREQVEKVDGMGKPVSMKTMQGWIEEHGSKYVKSYDDAYSAVGTLCHEGIIGDKSGRIQVPFLRHLVSEVGDKIKAETFDKIMKGGDSAVGTAIKGDSCPLDEFLNFLQK
Ga0187742_1062046	Ga0187742_10620461	F098651	PGHTARPAQGPGPGEMPAVRARASRKHLTEYQGWPKGIYPMSDGWVPPCYPKEEELIEYEEKMKARKKATLVKRHLCVKEPQLQRLSKRAFAQKSEYSMLAYAIAEGEYSGEGDDRSYFVIVFYEPAKKSKVERAFKSVGAALADYEQVVVDPDSKMEQEEKFMFAHGAGDPGECILGEYEYQVVPKGSPEYDDPWGPTHPEGKFWE
Ga0187742_1070049	Ga0187742_10700491	F043414	FNSEPATRDLAAMAKAMKVSKRPAAMKKVSMKKVKSKVAMSKTPAPAGLGNFKIRIGIIHGKVFDPIKVGTHDRNYPEHLKIKNNTGPNADGWGGQFMADVSTGLKIVRLHPDIFHVDFMTMEQVTEKRLSRNHLTFNFWGDMSIALMNEKPKLAKRLQKIQMNPNFRHHPVWDYYEWILHKSRYMKACERAGIPMIDTIHLEKGFNARDVLKKIVAKGWDKFFVKPAYMSFFGAGVINGKTQDFIDNIEPLLQYEAENKHQKEFLVQPYMLKPNGEVFDEIRNFFCDGEWAYSVYTDGVDYEGFWEQPKGKLKEACKKLAIQTMEEVKKVHKWEGKRINSLLNRIDIGIIPDKSRKLGYRIFVNEIEPQMTTWLGRYCPFVIQDRMAEVCVKQAHEMLKRSLAAKRKMPSPQKVRQLLDVLEQRLKES
Ga0187742_1077884	Ga0187742_10778841	F054880	GVVYLFVRKTRRCYPNPYSCIDTRPGFERRDAALCKWTHFLSEIDGSRDGSPTFFEAPLSSTKHFIAVYSPDNSAYTLTILADIGRFPRPGSNGRLTARQLSELQVQLSWDAAGFIPEGVAQAKQYWVYSSMLLESDNRTNMAVFLRPDKIMNTVCGLQNNTDRQYTIVPADQCSNGKCNVTIDGVLTDKRYVFNVVAESTTGSHRMAYAGLIMRTDWEVIRQAASDRTLRVVG
Ga0187742_1089574	Ga0187742_10895741	F025035	RRAAFGKGAVQSKVSNNLGGGQRVVSSVQLRAAKKSTGEPIMHGDTVYVKVMTGRYIGELDGTTKLEWVKARGTKKDKEHALTVEKMNNRDEPIKNGDVVMFVMPQGVHMDVLGSAVRARYYDPRGEWQKITIVKQDGGDVYSGDQIFLRGHQGEYLDANPLERAPDGEVKARWRDEGEWQVMWIEK
Ga0187742_1091982	Ga0187742_10919821	F010767	QPLICLTGGSAWQMAEPGGGSAEIDDSTSKLHEELSSVAPAGSPGCHCLEFDSWWNEGKHRRFVYIRYSITEGAFQMAIDEDSNLYHVPVAYGARTGEAVTVWDLHVGAEVDILGRMTTLQRCSQTTAEWNKYWADRLILLRNRLAEELKKYDTRKNDPWLTWQKARIEAGGADLRLLMGQVAGLCAQLNEYRPRLAAQLSVPQEMLIIEDLPRKHKESQEKAES
Ga0187742_1092234	Ga0187742_10922341	F004604	GAHAGLAVAFRARAARRAETKPAEKSKYVETVADQRLFEQVYLQYTSEYLKGPLYWHPDKLQGWLPDYPGTPMIKEGKYTSHVIGNLKAFSSNELAFLSMLFFGVGLYGNLQFNFYDPQWAKVDAGGFFNVSYIVESFLLPISFFMHIACYIQRQNGK
Ga0187742_1099111	Ga0187742_10991111	F074344	GSARQLSNVFEVFKFDFEKNLMPDAHSITFTPISTGKITAIAFWYEMHMDMEGDVILTNWPESIPPADFSMLEKDLHRVSPLRQAVCNFQGSYIQEVVKDEPIEIDVGYQQAWPQFIWPGTEMVQKESGERIPKPPPMPRHRLYFEKMKTETEKLEQQLQSGLMYDEEMLGDGYAAAERIALEPNGNPNYLIDPNNANFFHMMFFL
Ga0187742_1107209	Ga0187742_11072091	F034936	SAEGVTPLSIASFTGCCAAMQKSQSEGSLAFLNNSKVGSATGFMLVCGGIMAIPHGKKSRGLADVATRFTAVSEYQDRFREIPHCYASMDRKPLMPYNPNSTRSRLALEDAPVPLKNASTIEFRDKFCVHKRRFVTTHKNYYTGERPDMRSNPGMIADSTRLKKRLQEM
Ga0187742_1109440	Ga0187742_11094401	F003183	CGLCEGVGGMAYGNANEKIVITPCEPLANASQVDPSTVAKPLYPKKFTIRRKDGKQGGYSDTLIGWKTDPFCFGFFPQNDSTKPMCYRSEDAYVKYYDIDREAQRAEYTIHNGGLFAAFPNITSIILHVNEQMWIQNDLWGVKQCICANPSGNHCTNPPCKAYVQHWDTFANAQYLGRERLGAEWIQNHGVGESAKMMELDHFILWAHHVWTDPSSRRLVRAWKPFNGLQLYDPEAWEDDVADPSVFDSPPEICKKGQRSVRINCDDEGNYHPKKMENEHILNSLLQRALSHGPQGIAKYAAGLWDDLNLVV
Ga0187742_1125623	Ga0187742_11256231	F083686	LLKFYHAIPYYYPLPKKSLRAMASLHAQQFEILVACTCNCFSSVGMLLFNKLAVQALPLECSLVWLQLFFAAFFMLIFGFPYLHIGSMKDFLRWCMVVPFFSGMLMTSILALKKAPMSLVIVLRSASPLSSLIFERFYPEPLRISGSMICAIVVMVAGAVMYVSQLHAEHWEGIGWVMLNSIVAVCDRLLQRLLLSKEQHPVDISKTGITVINNMMGLIPVGMAAYFTGEVGQFPYAYANLTGLDKVYIGLSCVIGLSIGFTGIWAQSLISATSFLVMVNANKFVIIGIEAFGMHTKVLTHGQ
Ga0187742_1126067	Ga0187742_11260671	F042164	FLLTNEDRNQSPTAIVGVLERDNQESAAGKGIRALVAHTEQEYGYRVTAIQLNFHPNHKSSHKQHRDIYGAGQKGGINCTCSFMKCTGTVCYSIGSSRQILCETITDSRSKYETCGEECTGRKTYKWMHSGSAMHFNAPWNNNHTHGVPSVEEPCGPRISIALLCA
Ga0187742_1127453	Ga0187742_11274531	F056539	MKVQAIVLLALLGLVSCQLALVNPAGRGFSFHDARHGPCGQSPTEVGNRIAWEQGRVYEIEVQILGAAGGGVIVDRYACVRNGDDENPIEPILPIEGALKVQIPDYDDQIYRLYTRTPSFRCTGDVTMQLVYSTENGQEFFQCQDIILTYSSASALSMSIFAILAVVLMVL
Ga0187742_1128193	Ga0187742_11281931	F004604	AAGAHAGLAVAWRCRSQRQAAAKESTPTKYTETVADERLFEQVYLQYTSEYLKGPLYWHPDKLQGWLPDYPGTPMIKEGKYTSHVIGNLKAFSSNELAFLSMLFFGVGLYGNLQFNFYDPQWAKVDAGGFFNVSYIVESFLLPISFFMHIACYIQRQNGK
Ga0187742_1132463	Ga0187742_11324631	F057101	GQFVGKIKPDKDVERMARKFKLDDHVTSRVTELKVWRKRNGEEDRAAKDLERIEYHLRFAKRPNALCTLLVGRLLEGEIDELPDLTNAEKIMTDFKLDEDACSKLREIIEKRSPDEERVLTSVRKHLKSASNASSMLCKIARQLIDGQDLPDPPERPPKGKGGGKDGGKDD
Ga0187742_1132513	Ga0187742_11325131	F100359	HFGEGTCLCHAMAKDVRNPEFWNKFMQRPEVQAAMRSKLKYESAAEAAQRTKLDKLERKQRRYEIMNELMKCATNVKHLISPMFRYKITQQYLWKVLCEARKEGLLFCDKLRQPQVYHRLQAIKAEITAGPYGVAGWQAEEEVEEDLMDKMVVEADCIPGGIDGET
Ga0187742_1133512	Ga0187742_11335121	F061786	MGANNTKGLYLCETIYPSEDGRSCIPPDKLEKAIKKGEIPAPTQDDEEDLDGNMDEIIDNCIKEVWAYYDPKGQGFLNKSKTQQFFKDALSLVALRKMCKVKDLFQGRNQGSALDAAFKKVNTSMDGKVTFNQFEEFINAYELDEAIAFLTGGDGEVTVDTSKVEMVDTSAIPTGGGPVKGHIEYRDYSALED
Ga0187742_1140197	Ga0187742_11401971	F047070	LDEKLLVEDVRQAVRATAELQARETGELPSWPQVLGDTLLLLLPLWKLSALAVAKGQEALTHFVAGPPLGANLGAQRLLRRLIEVLLSEKADFMDIALWFAAEPSSAALLTSGEAVHFLLPEAANDEEFASFRKEGLMRTQDNLAYLQGHLLRLPKHLRVHVSAYWRKAVEEVHLYLQLYLRVIEAFLEVQKEVHTFVQTQLFIEVLLGLPLLTWLSTDGVSPRPRGVRDAKSAAHAA