3300030703: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 27_T1F_3212KB8 (Eukaryote Community Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300030703
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128996 | Gp0213243 | Ga0187751
• Sample Name: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 27_T1F_3212KB8 (Eukaryote Community Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 72595105
• Sequencing Scaffolds: 17
• Novel Protein Genes: 18
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	9
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456	1
All Organisms → cellular organisms → Eukaryota → Sar	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 40.7982
  • Long. (^o): -77.8599
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000023	Metagenome / Metatranscriptome	5736	Y
F000241	Metagenome / Metatranscriptome	1481	Y
F001154	Metatranscriptome	763	Y
F001618	Metagenome / Metatranscriptome	662	Y
F003025	Metagenome / Metatranscriptome	512	Y
F010767	Metagenome / Metatranscriptome	299	Y
F015603	Metagenome / Metatranscriptome	253	Y
F018723	Metagenome / Metatranscriptome	233	Y
F031106	Metatranscriptome	183	Y
F034578	Metagenome / Metatranscriptome	174	Y
F043414	Metagenome / Metatranscriptome	156	Y
F054050	Metatranscriptome	140	Y
F080873	Metagenome / Metatranscriptome	114	N
F083686	Metagenome / Metatranscriptome	112	Y
F086596	Metatranscriptome	110	Y
F098651	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0187751_100390	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	550
Ga0187751_105872	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	596
Ga0187751_106673	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	511
Ga0187751_110639	All Organisms → Viruses → Predicted Viral	1224
Ga0187751_118307	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	663
Ga0187751_139053	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	515
Ga0187751_154666	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1070
Ga0187751_159233	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456	563
Ga0187751_168746	All Organisms → cellular organisms → Eukaryota → Sar	553
Ga0187751_174378	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1313
Ga0187751_178891	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1299
Ga0187751_183036	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	612
Ga0187751_186714	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1147
Ga0187751_188910	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1073
Ga0187751_189802	All Organisms → cellular organisms → Eukaryota → Sar	1081
Ga0187751_193784	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	516
Ga0187751_194897	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1426

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187751_100390	Ga0187751_1003901	F001154	LVYHDVAWTAISPSSRIGPSVNGKRWPRRCPWCASRTLEIMVKVTVGKAEDPWCEIELTEEDVEDWKKGVDITEEKFKEVIQLPPITLENCHEREDGDLQWDEITFEEEVNGKYWHAVIMALHRIREDFVKKQRKMKHLDWYMTMKKTSDKRNAKYYV
Ga0187751_105872	Ga0187751_1058721	F086596	SRALLQQTRVPRNCQSLVAPAMLRVLVFVLPLVNGSPALRGDGSGNYVDSVQCTGSGTLPTDPVCFSGSVLLETFDIQVLSYDGKMGTVNLKAEGAQNAQCDGAQFESQDNAITIENDQGCGLSKYDYTVRYCPDQDSLIVNLVKPFNVRVVLDSTSCNGEV
Ga0187751_106673	Ga0187751_1066731	F018723	MPDKAKDSGKKAKEPFTQQYDLKDVFPHFCDRKTKLLALQDVAYVLRAMGLTIYVDEEKGIREQLEKVDGMGKPVSLQTMQTWVEEHGKNYVKSYDDAYSAVGTLCHEGIIGDKSGRIQVPFLRHLVSEVGDKIKVDTFDKIM
Ga0187751_110639	Ga0187751_1106391	F015603	PFSKSEATEMSIKAFAGAVSLLHWAVAQDLSAACPHEDDINVEKHQEIRDGVSVYRDIRFNNTDRWYYMNENNVTVMNQPDQYRKLIINLEPCRGVVYLFVRKTRRCYPNPYSCIDLVPGQERREASGCQWRPDSWTHFLSEIDGSRDGSPTFFEVPLSATKYFISVYAPENSAYTLTVLSDIGAFPRPGANGRLTARQLSELQVQISWDAAGYIPTGISETKQYWVYSSMLKESDNRTNMAVFLRPDKIMNTVCGLQNNTDRQYTIIPASQCSNGKCNATIDGVITDKRYVFNVVAESYRGHKMAYSGLIMRTDWEVIRQAANDRTLRVVGAVSGSVLGMVIIIYFLMLKLYG
Ga0187751_118307	Ga0187751_1183071	F010767	MADHEQSMEDESTERLQQELSGVTPDGAMTPGCHCLEFDSWWNEGKQRRFVYIRYSITEGAFQMAIDEDSNLYHVPVAYGARTGEAVTVWDLHVGAEVDILGRMTTLQRCSQTTAEWNKYWANRLMLLRDRLAEELKKYDTRKNDPWLTWQKGRIESGGADLRLLMGQVAGLSAQLNEYRPRLAAQLSIPQEMLIIEGLPRKRKQE
Ga0187751_139053	Ga0187751_1390531	F086596	PLPSDTGRPVDLRLRIFLASEVMTRILSSLMLPFLVAGHSRSLRGDGDVYVDSVKCTGDKPLPMEPACFSGGMLVETFNIQVLSYNGQIGTVNLQAEGSQSAQCDGAEFVNQDNVITIANDKGCGLSDYDYNVRYCPDQDSLIVNLVKPFNVRVVLNSKTCPAGEV
Ga0187751_143062	Ga0187751_1430621	F000241	MARPVLLPVLGVVAAVYTASLAFVGTPQAAPRVSRVPARVSAEYLERLGPKDSDVPFDPSAATGPGASVEFKKRPFGILRYQPGQSLKGAMAMEIIPKSRYPGDPQGQAFASGVQSGWVVTSINGQNVQNEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAEPAAAPLAVQFNSIPGYVYKGAELKEDGQDGFAR
Ga0187751_154666	Ga0187751_1546661	F083686	LTRSYDYYLRANKNPVAPMTPQPEQMQIVVASSCYCFASVGMLLFNKFAVQDFPLECCLVWAQLFFAASCLSLFAFPYIHVGSALDLFRWCMVVPFYCGMLLTSILALKTAPMSLVIVLRNTSPLGTLVIERFYPEPLRISSFMLGSIFLMIAGGVMYVTQLPQENWQGIGWVFLNSGIAVVDRLLQRLLLSKEQCPVDISKTGITLINNLVGMLPVGIAAYATGEIEKLPLVYGTLSHWDKFYICMTCIIGLTISYTSIWAQSLISATSFLVMINANKFLIIGIEAFGMHSKALNHIQIFGASLTILGGVLYGRSRQAIELEAEERKSLLPRK
Ga0187751_159233	Ga0187751_1592331	F001618	LFWCPNCQSCSGLQQNMWRPDPGPCVAQVADWGEHPDDVEYMRQLKALPKKVLKRREVIAKDMDLKRVCLKQGKIHFSVACWNLSEYSRSGGLQDQASSLIHVFYESKDERKVLNAFSSAGIDLESVEAVPVDPNSSKKHEQQIMYAKECLYIQDENTWEEGKPLSPEEVKQRFQGRMK
Ga0187751_168746	Ga0187751_1687461	F031106	PTLASDEPEEVRKEKLLEMYREFAIELHTGMYLTQLTSNRDYADIHVQLMEDLTTLKLDQSNGRIIEFPLTNVSKVYRIVKNDDKWYAAGTPLPNASPHAEQIVVVEFMRRKLAFVFKELQVSQRFLICMELLIRRAQQKQAMRSLTPTFPPHHTQSRQCPTPRLVHDAMQRPIPSPPER
Ga0187751_174378	Ga0187751_1743781	F080873	QGSEDSAMKRVACLVACLILQVAVGIGSSNFLGSQKDHALMAEPEPIAEAAPNKPTKPLFGPEAYVLGIIAPGSFLLGFGAVVALRYHERYNPSSDGEVVERQPENLDEDVYGSGVATLVRDSFSLVDGKGDLALRISRLSSSLLLMVFVIALQVFVILQMQSLVASRAVTEIRQIYGRYEYVMYGAEMSHVYLTPNGFPRGLDKQYFDPSNFGRLTEDEQASACRIPFSQPQLLLPILFLWTLTIIADLRRCGDLFVRLILATPTITSMRDAVVESDGECEIIVGLTRPLKALLMSTCILPRYFIDVYLLWLGCRWLAATPSFGDLLLNAVALEFILLLKDTLYAGVVPDRNKRATQNTLIQPWQKTEPANYRVFLSSFLLILATVAWVLYYVYRFQAVLPDYKWDVAKVCASYVKAITSGKSS
Ga0187751_178891	Ga0187751_1788911	F000023	LWTVEHRTSSAESEIARNMATMEELEKRLAAIEKAMEEEAAGGAPRKAGSDAQVMKKVATRLQDFESQITAQLSNLQTDFDKKLSHVNRGASSTKPVDGAGGAAGLDTMAEDLDQLKYDVGELKDLLGNNKGEVNHIRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKNEMNTKLDTKVDNVAWKEANDDLDAAVKTVRDMVSSLRLDVDARRRKVDEILATVRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNDIRQKQQEAFEKIGAVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNG
Ga0187751_183036	Ga0187751_1830362	F098651	SMPAVRGRVGRKPLTEYQGWPKGIYPMSDGWVPPCYPKEEELIAYEERMNARKKATLVKRHLCMKEPQLQQLRKREFAQKSEYSMVAYGIAEGEYSGEGDDRSYFAIVFYEPSKKSKVERAFKSTGLELADYEQVVVDPDSKMEQEEKFMYAHGAGDVGECILGEYEYQVVPKGSPEYDDPWGPTHPEGRFWE
Ga0187751_186714	Ga0187751_1867141	F054050	VTTPSFQRKALARGPLPGGVAPQTVGSSMAASAQNSLETMTLKSSMTHPYLTSKFQVGSAKSDKINYTLAQKVFHSGDVPQEVLDSKRAVQKKKQPNILGTEKRDWNSSTIADQKIQKDQHKDLKRHLLEIRAGIHDEKILKPCKAHTDEQIIERYKFVVAMTGQGPIGKLSGKWFNAIDERGLPAHCVADHWNDWNASYSTHTKEDIQQSHAVVQQKDDRRKRMMTRDNKLNSEAYINPTQAIANMNDRLRERKIDFQDLKVQFKRELKVEFPQASEERLQAMAQRLLNEKLLADEKMARFPVQHESFRPNLSLTTQDRRYKVFHHPGTFVWNEAEKREAWTCCMNFDSNSRGCEFRMVNPDEWCYQGFERA
Ga0187751_188910	Ga0187751_1889101	F080873	APGTAFLSLAFVIFVRSMEAQSSERPERTAGEWHEDLEVVEREPENLDEDVYGAGIAALVRDSYSLVEGKGELVLRVSRLASSFLLMAFVVFLQIFVIKQMQALVASRAVTEIRQIYGRYEFVMYGADVTHNYLTPNGFPRGLDQQYFDMANFARLTDEEKDLACNIPFSQMQILVPILFIWTLTIVADLRRCGDLFVRLILSTPSITSMKDAVVEGEGECEIVVGLTKEVKALLALTCMIPRWIIDVYLLWLGCRWLCATPNFGDLLLNSVALEFIVLLKDTLFVGVVPDRNKRATQNTLIQPWQKKEPANYRVFLSAFLLVLVSFSWVFYYIYRFQAVLPDYRWDVHKVCQNYTA
Ga0187751_189802	Ga0187751_1898021	F003025	MGPNWYKYLLTVPWIPVIHFFGLNDTGALFAIEWWMSFPEEGAGGKCNKEFWSKWFPRRVKHNCVVWSLWLCVWLLGTWPLGRPFSEGWKFVLPVTCAARVGFSLAWMFITNFTHSLPWNKFLASDPGRNRPILHNLMALAVGGKHRWNEMLFHDVHHAFPNALGTLSQRGRFHGWKKVHDASVEVLYRGLWKPNGDEETEMQKQQKKRSLLMRQGQ
Ga0187751_193784	Ga0187751_1937841	F034578	LFLYVRATACVRSALQSIMASWFAADFGARFAISEEGKDFIQYCCKHINQAYNHKTALTRVTGSPWERVMLSQGPTATIAELLVVVCSSDANLVESSKLGGEQALHSLSRFGDSAAIRQQATMLLTKLAVVLKK
Ga0187751_194897	Ga0187751_1948971	F043414	WLKQLLLYATILRPPTMVKVVKKPATKSKKVSKNVKKATKSSSGAGGFKIRIGIVHGKVFDPIRQGTQDRNYPEHLKIKNNTGPNADGWGGQFMADVSTGLKIMRLHPDIFHIDFMTMEQMTEKRLAKNHVTFNFWGDMSIALMNGKPSLARRIQKIQKNPNTRHHPTWDYYEWVMHKSRYMKQCTKQGIPMIDTIHVENGFKARDVLKKIVAKGWEKFFVKPAYMSFFGAGVINGKTQDFLDNIEPLLQYEAENKQQKEFLVQPYVLKPNGNVFDEIRNFFIDGEWAYSVYTDGVDYEGFWEQPEGKLKEACKKLAIRTMEEVKKVHKWEGKPLNSLLNRIDIGVVPDKSKKEGWRIFVNEIEPQMTTWLGRYCPFVVQDKIAEVCVKQIREMLKRSLAAKRKMPSPEKVRKLLAILDQRL