3300030701: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 39_T1F_3236EL1 (Eukaryote Community Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300030701
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128996 | Gp0213255 | Ga0187763
• Sample Name: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 39_T1F_3236EL1 (Eukaryote Community Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 63503478
• Sequencing Scaffolds: 14
• Novel Protein Genes: 19
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium necroappetens	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 40.7982
  • Long. (^o): -77.8599
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000023	Metagenome / Metatranscriptome	5736	Y
F000085	Metagenome / Metatranscriptome	2467	Y
F000241	Metagenome / Metatranscriptome	1481	Y
F001051	Metatranscriptome	792	Y
F001313	Metatranscriptome	725	N
F002609	Metagenome / Metatranscriptome	543	Y
F003025	Metagenome / Metatranscriptome	512	Y
F003026	Metagenome / Metatranscriptome	512	Y
F003866	Metagenome / Metatranscriptome	464	Y
F004604	Metagenome / Metatranscriptome	431	Y
F004725	Metagenome / Metatranscriptome	426	Y
F005748	Metatranscriptome	391	Y
F018723	Metagenome / Metatranscriptome	233	Y
F048097	Metatranscriptome	148	Y
F070138	Metatranscriptome	123	Y
F074387	Metagenome / Metatranscriptome	119	N
F076865	Metatranscriptome	117	Y
F093247	Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0187763_101361	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	896
Ga0187763_104755	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium necroappetens	1005
Ga0187763_112470	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	573
Ga0187763_116814	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456	667
Ga0187763_119684	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	963
Ga0187763_122734	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	567
Ga0187763_123464	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	733
Ga0187763_126563	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	995
Ga0187763_132256	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	877
Ga0187763_137613	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1072
Ga0187763_155833	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	834
Ga0187763_157491	Not Available	640
Ga0187763_159625	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	559
Ga0187763_187577	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	524

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187763_101361	Ga0187763_1013611	F093247	NMNESAPPLLQGGGILGRFENVRVKKSAKKTVTCDAATPEYLRHDFLKPQHLPIERVDEEANFIATSNINETRFHKGFHRRHQADIQQDAARLEHEAARDWARQERAAAQASAAHHLRDKCTFNILTGEGVGRECEFRHVGKKILNPYGSMQATFSEHDREERHRVKNSKHRFFEHPAPEKQVRAANLFNEGLQTTVRESAVLGYGRGGVSRTRARSCGVADNFAHLQALPPEPEYEAPHNGNASQIILG
Ga0187763_104755	Ga0187763_1047551	F000023	MTVTLEELEKRLAAIEKSLEADGEGGVLPSRKTGGDAQIMKKVATRLQDFESQITAQLANLQTDFDKKLSHVNRGAAATKPVDGAGGAAGLDTMAEDLDELKYDVGELKDLLGNNKGEVNHIRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKNEMNTKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNK
Ga0187763_112470	Ga0187763_1124701	F003866	ARALFVRKAESSAAMGDDGDVRLTTVSKDGEKLGNLIPADSMTAAEGKSAIPGKWKIPGVQAPVELKVSGSSVKSVQQPFGNQPLLGEIEEGEKMLGLHITLGGFPMKAWMKKEGQQTVLTFSNGGRWSKL
Ga0187763_116814	Ga0187763_1168141	F048097	GNLSDLIFLALVGVTVQWLAYPATLFEDLGPLKAQFKAQSPDMEALIKFGAGLLLFLGMTFSAVSWNPVNGKMAGFGAFVTMGYFIYSVFKADSEVFLPRLFYAYAGVILLGALHIFAFPSNPLPPKSPEVKNNHGNFSDLIAISLLGVALSWYFYPEHLFQDLGPLKAQFRSHSADLATLIKFVAGLMVILSLMLSGVKWNPINGKLSGLGGFVAAGYTAY
Ga0187763_119684	Ga0187763_1196841	F001313	NLSEDMINLKNELTAKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATVRHDITAVETNLEESKSKLAMDTDHAINALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNDSRSKQQEVMEKIGDVEQQSELRSAESSRRLGALDLRMSGVQGGLGEQKRDILKLREEVNGLTVKSASHEVDIQKGSDAVKKMEKQRNLDGQNFKAQLDAIHDVLDTKVNEKPFEDVKHCVSSLTKGVVKFAQVVGVFPGPRFDDAEGGEGAEADVELLGWEESAETLSFRVDK
Ga0187763_122734	Ga0187763_1227341	F005748	RLRPYAAAAGAGAALPMTSLSAGFNKVGLSLLVLPWKALPMALALLPTAFVLPAAYRMIFQNSMRHTTASVFTVILYLVLSFMPVPCFENLFSELAFYGIALVSTFFMYTFFPEVLLNDFMFMHYLALFTIPLIPLAFAYMPMFAARSYLFL
Ga0187763_123464	Ga0187763_1234641	F004725	MATSAPLLGKAAHSKASIFYGADEYLEELKKKYEHDHEIAALKNALPGEGDPNAAGVAQSNDKMLSVQKNDENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFCTQVLMVIGYCAALATFPDYWWTCTLCFGVPFSYIAIQNIYIDHDVMHGATFPVYEWQRFLTHPFADFVSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYAL
Ga0187763_126563	Ga0187763_1265631	F002609	DFVSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWIPRRIKHNAFVLSLWACIWLLGTYPLGRPLSEGWRFMFTVSFFARIGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSMMMQQGK
Ga0187763_132256	Ga0187763_1322561	F074387	YPVGMEADAENWKTTYEVMNEMRSFARSPYPPGTAIHQPGSRDHFGYSAPGPIASRLTNSELALTEDTDIPNPREHMAITRIQEPDDRRVFEKHDVDEMLRTYNSPVAKATLSPSKPQSLAKTFSLPTIARRSEAPPKLSERNPVIKKLEDAHFSYFVPKNMQREHKDRLNTAQLSKLKKANMISFPFTGEGTGFRSQGSGANWWPSGSYAQVPTSYRLQFGRPGFFRDTSPLMQSKFPQQAVSAAQEDLQ
Ga0187763_137613	Ga0187763_1376132	F003026	MFTVSVFARIGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGK
Ga0187763_142672	Ga0187763_1426721	F000241	AMARPTLLPAVAVLAGVYSLASFCFVGSPQTPRACSRVPARVSAEYLERCGPKDSDVPFNAGAASGAGATVEFKKRPFGILRYQPGEGMKGAMAMEIIPKSRYPGDPQGQAFASGVQSGWVVQSINGMNVQNEDFGKIMDMLDDEVADPRFSKSTALALDKQGGRMAEPVEAPLSVVFSSIPGYVYKGAQLTEDGQDGFAR
Ga0187763_142683	Ga0187763_1426831	F000023	NTKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNDIRQKQQEAFEKIGAVEQQAELRSAEASRRLGALDLRMSG
Ga0187763_146991	Ga0187763_1469911	F000085	SGSFLELLRAISLFRRCFRQGRPHGKARLPGSGSGSFAMVRALALALACSVARAQNWPACQEQNTVIRNAGKALFTNLQGYGAVIGCFLDDCMSSDKFVANEIESCAKVCFSLPECTHWVWGTEEGEQKCWFRTGDDGREAGEGWISGSKSCYPPGTTVLPLGNSECWAEGFGYENCCEAKFGPNGNAQCWDGVYNYDRCCFPKEEL
Ga0187763_155239	Ga0187763_1552391	F070138	GYTHRTVLFDSMQDAKAEYGGALNFSAYRQGRDRQYLGVNGKNYYAKPWGNDSSNIQAVINGPSYWKRVYYRENIAARFAREDAEAAERKAQAEIAEALSTGAGEAPPRRSQSESALQKPKTLDAKDTYAPIKENMKPFVEKQGKPRIRAMEAGERLHFFNTLHNKYHMKAGGKNLEWNVSKQTHRSTKNELNWILSNYFRTDSHAVLKGAGHD
Ga0187763_155833	Ga0187763_1558331	F076865	ILHKSRYMKACERAGIPMIDTIHLEKGFNARDVLKKIVAKGWDKFFVKPAYMSFFGAGVINGKTQDFIDNIEPLLQYEAENKHQKEFLVQPYMLKPNGEVFDEIRNFFCDGEWAYSVYTDGVDYEGFWEQPKGKLKEACKKLAIQTMEEVKKVHKWEGKRINSLLNRIDIGIIPDKSRKLGYRIFVNEIEPQMTTWLGRYCPFVIQDRMAEVCVKQAHEMLKRSLAAKRKMPSPQKVRQLLDVLEQRLKES
Ga0187763_157491	Ga0187763_1574911	F003025	LNDTGSLFALEWWMHFPDEGPGGKCNKEFWSKWVPRRVKHNSFVLCLWALVWLLGTYPLGRPLSEGWRFVFTVSFFARVGFSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNIMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGSRAL
Ga0187763_158261	Ga0187763_1582611	F001051	TDTIPVLVTMVDVHNAKSQDMFYFCNVGSGGAATKVIGRSQTLSVEVGITTVLTLIVYECPEPVFTPETARCLGVLRVPVERLAERYSSGIFQQWFNLDTKTDPRMPAGDLQSLVTKFEQSYADSVNDIYQPKVCLSVIGSSFEVQQGSRSTFGIFVGEDVKTQAGPDLKALIASHKQQAAYIDALHEELRRLNTPSYRPLAASMAQPIGPATPGSFAVPRQGPAPGYGAFGAPVPSSMAPH
Ga0187763_159625	Ga0187763_1596251	F004604	AAAKESTPTKYTETVADERLFEQVYLQYTSEYLKGPLYWHPDKLQGWLPDYPGTPMIKEGKYTSHVIGNLKAFSSNELAFLSMLFFGVGLYGNLQFNFYDPQWAKVDAGGFFNVSYIVESFLLPISFFMHIACYIQRQNGK
Ga0187763_187577	Ga0187763_1875771	F018723	KEPFVQQFELKDVYPHFCDRKTKLLPLADVPYVLRAMGLTIYSEEEKSIREQVEKVDGMGKPVSMKTMQGWIEEHGSKYVKSYDDAYSAVGTLCHEGIIGDKSGRIQVPFLRHLVSEVGDKIKAETFDKIMKGGDSAVGTAIKGDSCPLDEFLNFLQK