3300030700: Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen0, Rep 1, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) (v2)

Overview

Basic Information

• IMG/M Taxon OID: 3300030700
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118397 | Gp0306429 | Ga0307896
• Sample Name: Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen0, Rep 1, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) (v2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 65256056
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 34.4149
  • Long. (^o): -119.841
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F086383	Metagenome / Metatranscriptome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0307896_122261	Not Available	913
Ga0307896_123681	Not Available	850
Ga0307896_134017	Not Available	542

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307896_122261	Ga0307896_1222611	F086383	QKSYAVKTIFPLQDESIQSILAGYDLTFSEKTMIAALDRSITWNNQNFSNYDIVIWQTSILSSYVFHTNESVKPSFIKNINRFVPNMDIIVVVQPLEDKNQIIQKFNEVIQQFDNVYPVNFVYGGVDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCCSNCKDYAKEEQNRQNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL
Ga0307896_123681	Ga0307896_1236811	F086383	VTLHIALDGIYVNVNHIIVQKLVEYLASKSYTVKTIFPLEDEIMQSILNSYDLTFSERALLAALDRSINWNHENFSNFDIVIWQTSILSSYAFHTNPEVKPSFIKTINKFVPNMDIIVVVQPLQEDNQIIQKFNDLIQQFNNVYPVNFVRGGVDLTFKEAIETIFEVLPTCNWCGRLFTKTIHFKKYCSNKCKDYAKEEQNRQNFRNYYKRYKDTMSEAQKG
Ga0307896_134017	Ga0307896_1340171	F086383	ALDRSITWNNQNFSNYDIVIWQTSILSSYVFHTDQNVKPSFIKSINRFVPNMDIIVVVQPLEEKNQIIQKFNDFTKQFDNVYPVNFVNGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAKEEQNRLNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANTDPEVE