3300030697: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 11_T1F_StrKB8 developmental time series (Eukaryote Community Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300030697
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128996 | Gp0213228 | Ga0187736
• Sample Name: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 11_T1F_StrKB8 developmental time series (Eukaryote Community Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 47847093
• Sequencing Scaffolds: 12
• Novel Protein Genes: 15
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 40.7982
  • Long. (^o): -77.8599
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000076	Metatranscriptome	2620	Y
F000241	Metagenome / Metatranscriptome	1481	Y
F001154	Metatranscriptome	763	Y
F001618	Metagenome / Metatranscriptome	662	Y
F001767	Metagenome / Metatranscriptome	638	Y
F003025	Metagenome / Metatranscriptome	512	Y
F003026	Metagenome / Metatranscriptome	512	Y
F003866	Metagenome / Metatranscriptome	464	Y
F004604	Metagenome / Metatranscriptome	431	Y
F004725	Metagenome / Metatranscriptome	426	Y
F014507	Metagenome / Metatranscriptome	262	Y
F097377	Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0187736_115555	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1488
Ga0187736_122441	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	655
Ga0187736_125409	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	590
Ga0187736_131816	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata	635
Ga0187736_136169	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456	535
Ga0187736_150502	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	590
Ga0187736_154544	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	525
Ga0187736_159858	Not Available	588
Ga0187736_160048	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	510
Ga0187736_162853	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	513
Ga0187736_163355	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	548
Ga0187736_165801	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	680

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187736_102545	Ga0187736_1025451	F000076	APPFPCWCAMAEEEGQEVIFTENTAPDREIWDEKGGLIKKGAAEIAERDQDHVPEVKVLTTLGMFAVPVTAETTIGEIRQKVQEWKPEYSLEQIELVCKDKDAWGPLFNKTSRPRDDDETVESLWSDWDIPRRMMQVALWIKEKNEETGEWESTFWKMLEESKCDDWSFQGHTI
Ga0187736_105268	Ga0187736_1052681	F004604	VGAHAGLAVAFRARAARKAETKPAEKKYVETVADERLFEQVYLQYTSEYLKGPLYWHPDKLQGWLPDYPGTPMIKEGKYTSHVIGNLKAFSSNELAFLSMLFFGVGLYGNLQFNFYDPQWAKVDAGGFFNVSYIVESFLLPISFFMHIACYIQRQNGK
Ga0187736_115555	Ga0187736_1155551	F001767	MATSAPLLGKEGKKAAHSKASIFYGADEYLEELKKKYEHDHEIAALKNALPGEGDPNAAGVAQSSDKMLSVQKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFFTQVLMVIGYCAALACFPDFWWTCTLCFGIPFAYIAIQNIYIDHDVMHGATFPVYEWQRFLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWIPRRIKHNAFVLGLWACVWLLGTYPLGRPLSEGWRFMLTVSVFARIGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNIMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGK
Ga0187736_122441	Ga0187736_1224411	F004725	FAEVGMATSAPLLGEKKQAHSKASIFYGADEYLEELKKKYAHDHEIAAMKNLLPGEGDPNAAGVAESKDKMLKVEKNNENRSLKTNRLFPTPNKPDPMPHNLAFLFTKITPEQMMYMWNVLTFIFVTQCTMIVAYCAALAMFPEMWWTCTLCFGIPFSYVAIQQIYIDHDVMHGATFPVYEFQKFLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQ
Ga0187736_125409	Ga0187736_1254091	F003025	LNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWIPRRVKHNAFVLSLWACVWLLGTYPLGRPLSEGWRFMFTVSVFARIGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSMMMQQGK
Ga0187736_127865	Ga0187736_1278651	F000241	AVASSSCAPPAYFAMARPTLLPAVAVLAGVYSLASFCFVGSPQTPRDCSRVPARVSAEYLERCGPKDSDVPFSGAAASGPGATVEFKKRPFGILRYQPGEGMKGAMAMEIIPKSRYPGDPQGQAFAAGIQSGWVVQSINGMNVQNEDFGKIMDMLDDEVADPRFSKSTALALEKQGGRMAEPVEAPLSVVFSSIPGYVYKGAQLTEDGQDGFAR
Ga0187736_131816	Ga0187736_1318161	F003025	SKWVPRRVKHNAFVLCLWALVWLLGTYPLGRPLSEGWRFMFTVSFFARVGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHHGLWKPNGDEETQMQKTQKKRSLMMKQGK
Ga0187736_136169	Ga0187736_1361691	F001618	MWRPDPGPCVAQVADWGEHPDDVEYIRQLKALPKKILKRREIVAKDLDIKRVCQKQGKVHFSVACWNLSEYSRSGGLDAQVSSLIHVFYEGKDERKVLNVFSSAGIDLESAEAVPVDPNSSKRHEQQIMYAKECLYIQDENTWEEGQPLSPDEVKQRFQGRMK
Ga0187736_150502	Ga0187736_1505021	F003025	PEEFHYALQQWAGPWSSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWIPRRIKHNAFVLSLWACIWLLGTYPLGRPLSEGWRFMFTVSFFARIGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDA
Ga0187736_154544	Ga0187736_1545441	F097377	ALMISSMMGNWDLVQLLVEDFEADLDGPLSRAGLRAIDYAGYEGYRFPNEHPICEYLKSKGSQHTWWGACCAGDFNRVKEYIDNGQDVDEINPVLWNGNAVFIAKEFGHNNIAQYLLTKGGTVVVRNCHTIDTHEMKWSIGRGDCFFYKACKLERPGAGVIDSAYVPEYE
Ga0187736_159858	Ga0187736_1598581	F004725	DLRSLEVKPTFQFSAAIVPMATSAPLLGKQGKAAHSKASIFYGADEYLEELKKKYEHDHEIAALKNALPGEGDPNAAGVAQSNDKMLSVQKNDENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFFTQVLMVIGYCAALACFPDYWWTCTLCFGLPFSYIAIQNIYIDHDVMHGATFPVY
Ga0187736_160048	Ga0187736_1600481	F003866	RLTTVSKDGEKLGNLIPAGSMTAAEGKSAIPGKWKIPGVQAPVELKVSGSSVKSVQEPFGNQPFLGEIEEGEKMLGLHVTLGGFPMKAWMKKEGQQTVLTFSNGGRWSKL
Ga0187736_162853	Ga0187736_1628532	F003026	GRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSMMMKQGK
Ga0187736_163355	Ga0187736_1633551	F014507	NRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFFSQVLMVIGYCAALACFPDYWWTCTLCFGIPFSYIAIQNIYIDHDVMHGATFPVYEWQRFLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGSNWYKYLLTVPFIPVIHFFGLNDTGSL
Ga0187736_165801	Ga0187736_1658011	F001154	SGLCPSCYGASDIGFPRHCDVPGSFHRLNCSRLSPRFPAAATPSLRGAMVKVTVGKAEDPWCEIDLTEEDVEDWKKGVDIAEEKLKEVIQLPPVTLDNCHEREDGDLQWDEITFEEEVNGKYWHAVIMSLHRIREDFVKKQRKMKHLDWYMTMKKTSDKRNAKYYV