3300030695: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under control temperature from Pennsylvania, USA - 23_T1E_2612KB8 (Eukaryote Community Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300030695
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128996 | Gp0213239 | Ga0187747
• Sample Name: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under control temperature from Pennsylvania, USA - 23_T1E_2612KB8 (Eukaryote Community Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 61952949
• Sequencing Scaffolds: 25
• Novel Protein Genes: 27
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	7
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Sar	4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 40.7982
  • Long. (^o): -77.8599
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000076	Metatranscriptome	2620	Y
F001154	Metatranscriptome	763	Y
F001618	Metagenome / Metatranscriptome	662	Y
F001767	Metagenome / Metatranscriptome	638	Y
F003183	Metatranscriptome	502	Y
F009535	Metagenome / Metatranscriptome	316	Y
F013530	Metagenome / Metatranscriptome	270	Y
F016665	Metatranscriptome	245	Y
F034936	Metagenome / Metatranscriptome	173	Y
F042164	Metagenome / Metatranscriptome	158	Y
F043414	Metagenome / Metatranscriptome	156	Y
F054050	Metatranscriptome	140	Y
F057101	Metagenome / Metatranscriptome	136	Y
F058692	Metagenome / Metatranscriptome	134	N
F068485	Metatranscriptome	124	Y
F073011	Metatranscriptome	120	Y
F074386	Metatranscriptome	119	Y
F082720	Metatranscriptome	113	Y
F083686	Metagenome / Metatranscriptome	112	Y
F084259	Metatranscriptome	112	Y
F086596	Metatranscriptome	110	Y
F097377	Metatranscriptome	104	Y
F098651	Metagenome / Metatranscriptome	103	N
F100359	Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0187747_102385	Not Available	947
Ga0187747_113802	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	501
Ga0187747_116096	All Organisms → Viruses → Predicted Viral	1267
Ga0187747_127277	All Organisms → cellular organisms → Eukaryota → Sar	837
Ga0187747_132123	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	598
Ga0187747_137261	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1163
Ga0187747_138276	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1203
Ga0187747_140780	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	1548
Ga0187747_143730	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	602
Ga0187747_143793	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	508
Ga0187747_144456	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	571
Ga0187747_152969	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	630
Ga0187747_155494	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	690
Ga0187747_157370	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	513
Ga0187747_157872	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	745
Ga0187747_159745	All Organisms → cellular organisms → Eukaryota → Sar	545
Ga0187747_168242	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	508
Ga0187747_170156	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456	577
Ga0187747_174552	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	594
Ga0187747_177426	All Organisms → cellular organisms → Eukaryota → Sar	538
Ga0187747_178242	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1064
Ga0187747_180966	All Organisms → cellular organisms → Eukaryota → Sar	1031
Ga0187747_193400	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1025
Ga0187747_194028	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	603
Ga0187747_194300	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	724

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187747_102385	Ga0187747_1023851	F068485	VAKGTLVNISYKAAHGWVYAGTVQPGSDVQQPATEGWIPQAVVKRVSLCRVAVDWPAEGQATLGVTKGEVIAVSKEAERGWVYGERLGVRPSDKLCDGWLPKKVLDYLQT
Ga0187747_113802	Ga0187747_1138021	F100359	FSMAKDVRNPEFWNKFMQRPEVQAAMRSKLKYESAAEAAQRTKLDKLERKQRRYELMDELMKCATNIKHLISPMFRYKITQQYLWKVLCEARKEGILFCDKLRQPQVYHRLQAIKAEITAGPYGVAGWQAEEEVEEDLMDKMVVEADCIPGGIDGEAPDRKQVLDR
Ga0187747_116096	Ga0187747_1160961	F003183	KFTGPDDGNPQGWNRTRRCDQDQMPRCQLCEGIGGMAYGDRNDDIIITPCEIVANASEVDPKTVAKPLYPKQFTIKRKDGKQGGYSDTLIGWKTDPFCFGFFPQNDSTKPMCYRSEDAFIKYYDIQREAQRADYTIHNGGLFAAFPNITSSILHVQDQMWIQNDLWGIKQCICANPSGNHCTKPPCKAYVQHWDTFATAQYLGRERLGVEWIQDHGVGQSAKIMELDHFILWAHHVWTDPVSKRLVRAWKPFNGLQLYDPQAWEDKVEDPSVFDSPPEVCKKGHRSVRINCDDEGNYHPKQSANTHILEALFERAMSKGAEGILDFTSQLWETATVVV
Ga0187747_127277	Ga0187747_1272771	F009535	PKRLCNRTLIPIMARGSLLPFLVAATLAVFAIRDLLSVVTFVGVPSSARGAGASSIPRSVGVDYLLRNGPKDADPPLINPASAAGPAHEVTFKKRPFGIARYAPGATGTGAVVMEVTPKSRYPGDPQGQAFVAGVQPGWVVKAVNGQDVTGVPFEGIMESLDDEVLDPVAALSLNLKESGTVTNFDSSTTADKSYGAVGESTFEFGGGQKAELPITVTYVEQR
Ga0187747_132123	Ga0187747_1321231	F086596	SLERVDTNKTPTKKLGAGIAMFRVLFLVFPCLVAGSSNLRGDGGNYVDTVQCTGSGTLPTQPVCFSGSILLETFDIEVVSYDGQIGTVNLKAEGSQNAQCDGAQFENQDNAITIENDKGCGLGKYDYNVRYCPDQDSLIVNLVKPFNVRVVLNSKSCSGEV
Ga0187747_137261	Ga0187747_1372611	F054050	LYVTTPSFQRKALARGPLPGGVAPQTVGSSMAASAQNSLETMTLKSSMTHPYLTSKFQVGSAKSDKINYTLAQKVFHSGDVPQEVLDSKRAVQKKKQPNILGTEKRDWNSSTIADQKIQKDQHKDLKRHLLEIRAGIHDEKILKPCKAHTDEQIIERYKFVVAMTGQGPIGKLSGKWFNAIDERGLPAHCVADHWNDWNASYSTHTKEDIQQSHAVVQQKDDRRKRMMTRDNKLNSEAYINPTQAIANMNDRLRERKIDFQDLKVQFKRELKVEFPQASEERLQAMAQRLLNEKLLADEKMARFPVQHESFRPNLSLTTQDRRYKVFHHPGTFVWNEAEKREAWTCCMNFDSNSRGCEFRMVNPDEWCYQGFERA
Ga0187747_138276	Ga0187747_1382761	F043414	IWLKQLLLYATILRPPTMVKVVKKPATKSKKVSKNVKKATKSSSGAGGFKIRIGIVHGKVFDPIRQGTQDRNYPEHLKIKNNTGPNADGWGGQFMADVSTGLKIMRLHPDIFHIDFMTMEQMTEKRLAKNHVTFNFWGDMSIALMNGKPSLARRIQKIQKNPNTRHHPTWDYYEWVMHKSRYMKQCTKQGIPMIDTIHVENGFKARDVLKKIVAKGWEKFFVKPAYMSFFGAGVINGKTQDFLDNIEPLLQYEAENKQQKEFLVQPYVLKPNGNVFDEIRNFFIDGEWAYSVYTDGVDYEGFWEQPEGKLKEACKKLAIRTMEEVKKVHKWEGKPLNSLLNRIDIGVVPDKSKKEGWRIFVNEIEPQMTTWLGRYCPFVVQDKIAEVCVKQIREMLKRSLA
Ga0187747_140780	Ga0187747_1407802	F001767	PLLGGEKKGGHSKASIFYGADEYLEELKKKYAHDHEIAALKNLLPGEGDPNAAGVAASQDKMLKVEKNNENRSLKTNRLFPTANKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFVTQVLMVIGYSAALATFPEHWWTCTLLFGIPFSYIAIQQIYIDHDVMHGATFPVYDFQKFLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPFSTNWYKYILTVPWIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKDFWNKWVPRRLKHNGFVLSLWACVWLLGTYPLGRPLSEGWRFMFTVSFFARIGFSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQNK
Ga0187747_143730	Ga0187747_1437301	F073011	VKVEISYEGEWLTGSTIELMEDTPSRLKVLVRMDNDASEKVISLGRIILADQRYKGTVGRMPRGRSRSRSRDGVDWAREKGKTDKELVEEMRKADREKAVCSSGKEYARKPVGYKAACALPREQGAASHRLMEEETFVPMKQARRRSPSPSKGEQDFRRNAPSAEHQARMQQLFEKYGMAKGSEGGRTGQDVDGPEMMRF
Ga0187747_143793	Ga0187747_1437931	F086596	RAAKTCSHHRCCQTRPAMFRLAVAALPFLAFGSSSLRGDGGSNYVDTVQCTGSGTLPTQPVCFSGSVLLESFDIEVVSYDGKLGTVNLKAEGSQNAQCDGAQFENQDNAITIENDQGCGLSKYDYTVRYCPDQDSLIVNLVKPFNVRVVLNSKSCSGEI
Ga0187747_144456	Ga0187747_1444562	F068485	WVYAATVKHGEQASDPPSEGWVPHAVAKRVSLCRVAADWPEEGAGTLGLLKGDLIAVSKEAERGWVYGERISPKRPDSPVDGWLPKKVLEYILV
Ga0187747_150918	Ga0187747_1509181	F000076	GSSFCLGSTVWEDDCCSIAMAEEEGQEVIFTENTAPDREIWDEKGGLIKKGAAEIAERDQDHVPEVKVLTTLGMFAVPVTAETTLGEIRQKVQEWKPEYSLEQIELVCKDKDAWGPLFNKTSRPRDDDETVESLWSDWDIPRRMMQVALWIKEKNEETGEWESTFWKMLEESKCDDWSFQGHTI
Ga0187747_152969	Ga0187747_1529691	F098651	SGLLRLVSMPAVRGRVGRKPLTEYQGWPKGIYPMSDGWVPPCYPKEEELIAYEERMNARKKATLVKRHLCMKEPQLQQLRKREFAQKSEYSMVAYGIAEGEYSGEGDDRSYFAIVFYEPSKKSKVERAFKSTGLELADYEQVVVDPDSKMEQEEKFMYAHGAGDVGECILGEYEYQVVPKGSPEYDDPWGPTHPEGRFWE
Ga0187747_155494	Ga0187747_1554941	F042164	VTNALQGVAPGHQSADEWLFKALVRAALTAPEGCVWKSGGKFLLTNEERNQSATAIVGVLERENQETDAGKGIRALVDYTEQNYGYRVTAIQLNFHPNQKSSHKQHRDIYGAGQKGGINCTCSFMKCTGTVCYSLGSSRQILCETITDSRSKYETCGDQCAGMKTYKWMHSGSAMHFNAPWNNNHTHGVPPMDDPCGPRISIALLCA
Ga0187747_157370	Ga0187747_1573701	F057101	FNIEDRWIKRLNETMRKRQDTKSEDIEKLYEVLERARSPTGLLTVKIGEMECGRFVGKIKPDKDVERLARKFKLDEPVASRLTELVYRRKQQGEPDRAAKDLFTIEQHLRYCKRTSAMATILAGKLLEGDVAELPDLTEAERVMEKYKLDEDARLKLREVIEKRSADHKEV
Ga0187747_157872	Ga0187747_1578721	F083686	GMLLTSILALKTAPMSLVIVMRNASPLVALCIERFYPEPIRINGSMLAAIALMIVGALMYVSHLSGNHWQGVGWVFLNSAIAVGDRLLQRLLLSKDQQPVDISKSGITFINNAVGMVPLAMAAYWQGELQQLPVVYATLSSWDQLYILLTCFIGLSICYTGIWAQSLISATSFLVMVNANKFMIIGIEAFGMHTKVLTFTQLLGATLSILGGVCYGRARANLEAETEQERMSLMNKDVPQKVV
Ga0187747_159745	Ga0187747_1597451	F013530	TDFKELVRVYFKCIKATVMSAEISIKSKTLRRLEVGEVLEALANPCHEEVTRVMRVQCVATQDELVGWVTVAGNQGTTFLEPGGNFYTCIKETVLSDSLELQDSKTLRRIAKGEVIEVLNFPKKDASVDVRRIKGKAKLDGAVGWISLASNQGTVFLEPC
Ga0187747_165113	Ga0187747_1651131	F084259	MEDTKRPVFGAEAERIGTRLDEATDEFLKETKSCRALQIPPGQDQLTAMEYVAYLGINLQLEPELSWVAREMLACPMPPQAEMKVSKAGVCYFHDLINDYYTIEHPLTQRYLKVLERQRLDLLCLRTKPSVNGLLFSQPDMLFNKQFRNLQIPCQSCGVMQSTLKCNQCLMSFCQSCADALHKNALGPRKNHTFLTTACGSLCSTCAVKKPQVFCANCEDYFCFKCFEDMHRRGNRLQHKSMLVSVSDGDVIEPQKRCEECEDRPAAFACDYCLDNYCVQCFWKCHFNGHRRQHTASKVAVVPMCNQCQNVRATIFSEQTQELMCTECFTMLHAKGNRMLHLFMDAMDLLVLLERLDPAFQEHMRRARPRVLW
Ga0187747_168242	Ga0187747_1682421	F001154	SSRIGPSVNGKRWPRRCPWCASRTLEIMVKVTVGKAEDPWCEIELTEEDVEDWKKGVDITEEKFKEVIQLPPITLENCHEREDGDLQWDEITFEEEVNGKYWHAVIMALHRIREDFVKKQRKMKHLDWYMTMKKTSDKRNAKYYV
Ga0187747_170156	Ga0187747_1701561	F001618	FWCPNCQSCSGLQQNMWRPDPGPCVAQVADWGEHPDDVEYMRQLKALPKKVLKRREVIAKDMDLKRVCLKQGKIHFSVACWNLSEYSRSGGLQDQASSLIHVFYESKDERKVLNAFSSAGIDLESVEAVPVDPNSSKKHEQQIMYAKECLYIQDENTWEEGKPLSPEEVKQRFQGRMK
Ga0187747_174552	Ga0187747_1745521	F016665	TPATMESMKRSPTFLVGTVQQKDILGEFQKREQHYTEEYSKNKPLCFSARAYQQPHPAKVRMGYKDADATLTSPMLLGVCDGVSQLEEFQMDPSLLPNELLKTCEELAMLQLMPDTNVSPQDQYRGPISLLKEAYQETSSFGSTTVLLAALDNSTRIHGKLHPMIAVLSIGDCELLMLRRTNGRQSELEAVFHTEMQ
Ga0187747_177426	Ga0187747_1774261	F097377	FEADLDGPLSRAGLRAIDYAGYEGFRFPSEHPICEYLKSKGSQHTWWGACCAGDFNRVKEYIDNGQDVDEVNPVLWNGNGVFIAKEFGHNHISQYLLTKGGTVVVRNCHTIDTHEMKWSIGRGDAFVYKALKIERPGAGVIDNAYIPEWQT
Ga0187747_178242	Ga0187747_1782421	F083686	YDYYLRANKNPVAPMTPQPEQMQIVVASSCYCFASVGMLLFNKFAVQDFPLECCLVWAQLFFAASCLSLFAFPYIHVGSALDLFRWCMVVPFYCGMLLTSILALKTAPMSLVIVLRNTSPLGTLVIERFYPEPLRISSFMLGSIFLMIAGGVMYVTQLPQENWQGIGWVFLNSGIAVVDRLLQRLLLSKEQCPVDISKTGITLINNLVGMLPVGIAAYATGEIEKLPLVYGTLSHWDKFYICMTCIIGLTISYTSIWAQSLISATSFLVMINANKFLIIGIEAFGMHSKALNHIQIFGASLTILGGVLYGRSRQAIELEAEERKSLLPRK
Ga0187747_180966	Ga0187747_1809661	F058692	KRRISHPNPLSNVAPIAACRVSMSKAFGTFSGAYSRHQNGTGMPHMDHDSSFSHKRKRLNVVAMLLNVLAPWLVFCGVFAAMSFYTHYTSPLLAWLVVLGGVASSALGGFLAWRTKMRDRDPTWYNFGCLAIALATIFAAVFGDMNYWYNMQPYYDIENINTYPSVNPGREKGQQLMDAGRVYFEDGTGLDTSKSMAFRNLDRYCVAPIVFGQEPLASYDFWAVGVNCCSGTTADFRCGEYDNPKARSGLRLMREDQRPFFRLAVQQAEAAYNIKANHPLFFYWMQDPVAEVMKYRSDGFKYAFIAIATHFAFNLLCVAGAALAFAKISHEF
Ga0187747_193400	Ga0187747_1934001	F074386	GTVSSVGKIWQLNGWLEDERVEFKEAPNKEVMQFARSVIWTKASSERMEAWTEQMRGLGYAGSSSNPLKRGVEGCCPGTSDAHAKLVEDNEDKDKAELKLLNDLISKWRDGVAKVAPRKVIPDFSNRGHTGLSVEHVHYLATSFKEKGFQKRQGNEGHDIPVLVREMPSSELGGKSIENWRSKLEDEKGFAPKEHYERLFRQKELYTSLGNGHFNQALNLFFTESPSIYSDQKYTINNDRDLKEAVYQGVGSIVLKGEIPLRDRETISKLLNSKREFKWNVNSDGSLNITDAFEDTSTCKQFEAMSKVLDAVELNCLVRSELGVKDSHRMGQ
Ga0187747_194028	Ga0187747_1940282	F034936	IKKLKSQLCHHQSKANLPWRMAPMAKSNSEGAHDFVKNSKVGSATGFMMVAGSMLAIPHKTGTKMKIQTAPRFSGVSEYQECYKEIPHCYASMERKPLIPYHPNATRSRLAVEDAPVPLKNASTIAFQDRFCVHNRRFVTTHKNYYTGEMPDMRSNPGMIADSTRLKRMLQDK
Ga0187747_194300	Ga0187747_1943001	F082720	GMVRPDFRQFTKVGYEGRLSVVSESQVHQDGLHRYVVQFTAGELSRADGVGFVFSQRLPCAKNIQRIVSIFVNQRGRICMRAFSEIERAEAFIKPLEVGDCVEMAVDLTQQVCTFNVWPAWSVVNWPATMGRPVSTAEFSFGSRMAALSQAAEKTVKLNVGHLACVVKNVGVTITLYS