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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300030558 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0131206 | Gp0296508 | Ga0257197 |
| Sample Name | Metatranscriptome of decayed wood fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF2-2E (Eukaryote Community Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 141256241 |
| Sequencing Scaffolds | 28 |
| Novel Protein Genes | 30 |
| Associated Families | 24 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | 1 |
| Not Available | 12 |
| All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 4 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 1 |
| All Organisms → cellular organisms → Eukaryota | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces litmocidini | 2 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Metatranscriptome Of Decayed Wood Fungal Communities From Pinus Contorta In National Forests From Montana, United States |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Decayed Wood Fungal Communities From Pinus Contorta In National Forests From Montana, United States |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Montana | |||||||
| Coordinates | Lat. (o) | 46.9233 | Long. (o) | -110.8694 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000212 | Metagenome / Metatranscriptome | 1580 | Y |
| F001542 | Metagenome / Metatranscriptome | 673 | Y |
| F001623 | Metagenome / Metatranscriptome | 661 | Y |
| F006461 | Metagenome / Metatranscriptome | 372 | Y |
| F013054 | Metagenome / Metatranscriptome | 274 | Y |
| F014579 | Metagenome / Metatranscriptome | 261 | Y |
| F015098 | Metagenome / Metatranscriptome | 257 | Y |
| F026808 | Metagenome / Metatranscriptome | 196 | Y |
| F027084 | Metagenome / Metatranscriptome | 195 | N |
| F032126 | Metagenome / Metatranscriptome | 180 | Y |
| F035198 | Metagenome / Metatranscriptome | 172 | Y |
| F043718 | Metagenome / Metatranscriptome | 155 | Y |
| F048103 | Metagenome / Metatranscriptome | 148 | Y |
| F052338 | Metagenome / Metatranscriptome | 142 | Y |
| F052990 | Metagenome / Metatranscriptome | 141 | Y |
| F054554 | Metagenome / Metatranscriptome | 139 | Y |
| F064331 | Metagenome / Metatranscriptome | 128 | Y |
| F064333 | Metagenome / Metatranscriptome | 128 | Y |
| F065397 | Metagenome / Metatranscriptome | 127 | Y |
| F070801 | Metagenome / Metatranscriptome | 122 | N |
| F076781 | Metagenome / Metatranscriptome | 117 | Y |
| F078067 | Metagenome / Metatranscriptome | 116 | Y |
| F083601 | Metagenome / Metatranscriptome | 112 | Y |
| F094786 | Metagenome / Metatranscriptome | 105 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0257197_1015146 | All Organisms → cellular organisms → Eukaryota → Opisthokonta | 1254 | Open in IMG/M |
| Ga0257197_1032429 | Not Available | 898 | Open in IMG/M |
| Ga0257197_1036989 | Not Available | 845 | Open in IMG/M |
| Ga0257197_1042242 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia | 792 | Open in IMG/M |
| Ga0257197_1044011 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta | 776 | Open in IMG/M |
| Ga0257197_1044116 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria | 775 | Open in IMG/M |
| Ga0257197_1044591 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 772 | Open in IMG/M |
| Ga0257197_1047484 | Not Available | 748 | Open in IMG/M |
| Ga0257197_1054479 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 698 | Open in IMG/M |
| Ga0257197_1058919 | Not Available | 671 | Open in IMG/M |
| Ga0257197_1059365 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 668 | Open in IMG/M |
| Ga0257197_1068586 | Not Available | 619 | Open in IMG/M |
| Ga0257197_1068750 | All Organisms → cellular organisms → Eukaryota | 618 | Open in IMG/M |
| Ga0257197_1072175 | Not Available | 602 | Open in IMG/M |
| Ga0257197_1078564 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces litmocidini | 575 | Open in IMG/M |
| Ga0257197_1081158 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis | 565 | Open in IMG/M |
| Ga0257197_1083193 | Not Available | 557 | Open in IMG/M |
| Ga0257197_1083274 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces litmocidini | 556 | Open in IMG/M |
| Ga0257197_1084696 | All Organisms → cellular organisms → Eukaryota | 551 | Open in IMG/M |
| Ga0257197_1085690 | Not Available | 548 | Open in IMG/M |
| Ga0257197_1086014 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis | 547 | Open in IMG/M |
| Ga0257197_1086955 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 543 | Open in IMG/M |
| Ga0257197_1088570 | All Organisms → cellular organisms → Eukaryota | 537 | Open in IMG/M |
| Ga0257197_1090773 | Not Available | 530 | Open in IMG/M |
| Ga0257197_1090965 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 530 | Open in IMG/M |
| Ga0257197_1095683 | Not Available | 515 | Open in IMG/M |
| Ga0257197_1097486 | Not Available | 509 | Open in IMG/M |
| Ga0257197_1098043 | Not Available | 508 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0257197_1015146 | Ga0257197_10151461 | F014579 | MDLDGLCIKFQTLLFVNKKFLNVFPLIALKLNHLTHLRVIDDGAIAGEFLLDDLQYLLLVELLGKPLYGSQGFTTIALLNSNMNVILRLLCFPSVFVGLGEGVEGLEVFD |
| Ga0257197_1032429 | Ga0257197_10324291 | F026808 | LPKSHLHNSLYIFIKQKHKHFIHLFLTMAGKKRKSGGPRRQSGGQRGTSATFEVGEQRLRLDDLFKSVTLEEGDVEGSVSLGNLTFPPNSARVLGWTITVSAVSGDVQFRTGVGHAKTAKISVPCAFPRPESVSAPPVSLVGPENTTFGVFGSVTVYFKPQ |
| Ga0257197_1036989 | Ga0257197_10369891 | F052338 | SSHINLRATQLKRMANKRNRPRTAKNSVKNVRRVGAFDKEQATLAHIKMDGPGITGVPSSFSGRCWVEWVPRLDATGADKRCFFSKVGEEEFEKILGESGNKLPRNGKSLNPEGRKFLVLFAGTLKVWKEAQKKDVGPTRGVVADIPASVNSQSIRDNVLLSVIGSGYAETIASRAPSRLSDTGETKRPTRK |
| Ga0257197_1042242 | Ga0257197_10422421 | F064333 | GKMREAVMSVLEPLLKQHVTPHLGKIVSIIKSPMREAFDDALNLFDEKVSKWQPNPDFEQSFRELDYFGRSYWQLYPALKKVDDMYEPLWALREVFSDIYPWHLVWKGHDAVYQHIDNAVYTWEQAILKERNAELAEPIKRDVILKYRHDTDIAVMRYYNKIMRKIVMPPFEAAVHPVAKHIIEPLADSIPEPLREFIDIKQMFEDLYKGIVVDSINVVLRSDGPDEAAAVAN |
| Ga0257197_1044011 | Ga0257197_10440111 | F032126 | LSIMQSSMFALVALSMLLACVQCHDKKNVAEYEIKEGLLSGGRSYEIKSKTNAPTKFDIRNELFNAGKKLILLEDGKEVYIVKHDILNIMSTWTIKEASTGKELGTIENKLRFVGSKMTANGAFGHYTIEGDFGNHSFTIKKEGKKVAKIEKKSFHIHDTYGLTVYGDDSRALMVLFTVIVDEIREH |
| Ga0257197_1044116 | Ga0257197_10441161 | F001542 | FLFNRYRLKYKTMAIDPLNRKMSMVAAFFAFVGVVLGVVALATNYWTVENVFTPGKAVTMQNGTMFMNENSDWTWNGLFYFCSSRVNIECVSRFWTTTFILCLIGLMFLLVGGIFLCWDMFKISDRRFIIPMLFFVACVLMTAGLFDYGSWARLNSHSSRTMIAAIVFAYSALPMAAFIAGRYSALDRFVTNGHVTNGQKYVPASTNGN |
| Ga0257197_1044591 | Ga0257197_10445911 | F001623 | LVSIFLHSFNKTKRETMSLDPLIRRMSMIAGIFAFLGVIIGVVALATNYWTMENMVSPGMAMQSPNGTMMMNEKSDWAWNGLFYWCTTQNNVGCQTRFWTTTFILCLLGLIFMLVGGIFSMWEMFQTSDRRFVIPMLFFVACVLMTAGLFDYGSWARLNSHSSRAMISAIVFGYAALPISAFIAGRYSAYERYMNNGHVNNGQKYVPASTNGN |
| Ga0257197_1047484 | Ga0257197_10474841 | F054554 | MFGKIKKGMGEVKASAEIETEYMMAKNKNNFDHPAENGVRIKAYQDAYQAADDFHDRIKSWSDKFQDLINSELKLEEKMNASSQLQSISGVFSTFITAQRNVVQLRQQFLAKVIEYIQTPAKKYIQDQTPIKQKIDQTNKSWIELRYYRKKSGSHVAEEKEAQMAYEQNIEQLFKLLDNNIDAQIAQWVKYFADFEVEFFTNAAGAAPRL |
| Ga0257197_1054479 | Ga0257197_10544791 | F013054 | LDVSRGQSLVDIGDGINLILKGSFFILVKIDFLDDRAVELVSVSSSDNTSGEDKIFEERVIDRVQSSRSGSLLRSVSLNPLGVDGSLSGDEDVSLESLFKFGNQLSMNSVDNTVAGIRNVDNDDVLLLTLGDGFDFSGVGDEEILDGILKVTDAILDFKE |
| Ga0257197_1054846 | Ga0257197_10548461 | F035198 | FSLSSNKINMVFVYNIFIEIKSISVFLVKFIRAVVVFLFLNYNSYIYYSVGLTITYGYVF |
| Ga0257197_1058919 | Ga0257197_10589191 | F043718 | LIKMVGSKVAFFLCATLAISTALPLNLGDILGGAVGSVTGLVDGLLGNVEEVLNGLTSPVTQLLNKVVTLLNIPSGANPLSFIQTLITQLEDVLNQLLGGVGSGVDDLTSGLETDVNQILAQLTQILNIPQGTNVLGFLQQLLAQLEQILQQVLVLVSQVLKALLGQNGLVGDLLGSLNDLKFAVLLQKLTGTLTQIVDELNKANVGGL |
| Ga0257197_1059365 | Ga0257197_10593651 | F015098 | MKFLVLIAALCCLEVCSGDSLSLDFLTANLLHPMLEQIQSNALNMLSSQLSTLFGSIFGKRALSDILNINLAQTLSPFIAQLTQIYQRLFTVFLQIVQNVEAWIEKPDWARIEFVRAGVEAESQVAQMKLGLGFLQPLVGLVQQHLGTLITDFEVIITQALDAAKHPVQSLIGSGSLLHP |
| Ga0257197_1068586 | Ga0257197_10685861 | F070801 | CDRNNMARSGLLKVARVFSFAGAFVIFCLGIVALVFGCLYNCASSSHDNYSHHCALCLAASALAIVVGLFVAIHELVRRPNGVLNNTMVRGILWILLVILPFWGWYSWVGSCLLIIGGLLYMIAYCTGRHHIDDVDSVNSVDNSNQGNTAAYTSSAV |
| Ga0257197_1068750 | Ga0257197_10687501 | F006461 | SAQSSNQHKMSFISKVFLFALLLVVVKGQYSLQVINKVDPCPGGNYCTLKLFLSAYNQQDLCEGGAVNLDASQIPGTGLGIQENGEYCRCCGNEAGCNNPDNAGMELVLNGGSCDNIQVNGPFYCGAHPPDARAIVDVSMGGDWPNCVATLTRKGGAPGCQYSC |
| Ga0257197_1072175 | Ga0257197_10721751 | F064331 | MYKEYADSLAEVFAFESTNLFDDEQPTEGDNVDGDEKKRAKNGRKEYTNMRHVWTDGEERRLLYIYAKQQGHVDQATLDALAKDMRKGITPAHINKWFKTLRAHQRTNAKVIKTHRRDARFTKAK |
| Ga0257197_1078564 | Ga0257197_10785641 | F078067 | TRLLSIMGEVLDKRRLVFVSASFLSKQYKSIDRTALNDSIFFFGAKRSWLFPANREEMLEARAQPTKYLEFDEDFKSLILQKEDSGLCCWLKPEGDFKKVSAFFEKVVDPVSGENYLPLVLDDDWWREEFDNKDAKYTSNVEQVISNYTAGEHDYDAVMELIYQSNPTLVPTLFWASEAEEKM |
| Ga0257197_1081158 | Ga0257197_10811581 | F065397 | VVVRVFVSRLYSPCKVSLVMAIPKMTVTTDRKWLEIAPPRRVCVGRRRPLEKTLRPIAEERSLSNGELLDGLCPTFPAVSGFRAEGDNERFASTEC |
| Ga0257197_1083193 | Ga0257197_10831931 | F048103 | ITRRNYAKNKIIRFYYCEFHYDRVLKTERYVNVRVVPLLTLINLYQGVNLEVILMYGNGDISRSS |
| Ga0257197_1083274 | Ga0257197_10832741 | F078067 | HIVMGEVLDKRRIVFVSASFLSKQYKSIPNELLQQSIFFFGAKRSWLFPANREEMLEARSQPTKYLEFDEDFKSLILQKEANGLVCWLKPDNDFKKVSAFVEKVVDPVSGENYLPLVLDDDWWRDEFDSKDAKFASNVEQVISNYTAGEHDYDAVMELIYQSNPTLVPTLYWASEAEENL |
| Ga0257197_1084696 | Ga0257197_10846961 | F006461 | VDCHTSMRSAAKLLLLSLFLVGIHGWQLQINNKVNPCAGRNYCTIKLFTANNAQQNLCEGGSVTLQDSQIPPTGVGIQENGEYCRCCGNEGGCNNPDNAGMQLIVNNGNCGSIQLNNPFYCGVHPPNAKSVVNVAMSGSWPNCVATLTRLGNAPGCQSSC |
| Ga0257197_1085690 | Ga0257197_10856901 | F054554 | DSYSAAHDFLDRIKSWTDKYQDLINSELKMVEKMNASAQLATISVVFTTFTTAEQNVVQLRQQQLGKIIEYIQTPAKKYIQDQAPIKQKIDQTNKAWIELRYWRKKGGSHTADEKEAQIAYEAHIEQLFRMFDNNIDAQIAQWVKYFADFQIEFYSTASGVAPRI |
| Ga0257197_1086014 | Ga0257197_10860141 | F065397 | MAIPKTTVTTDKKWLEMAPPRRVCVGRRRPLEKTLRPIAEDCSLSNGELMDGLRPTFPAVSGFKAEGDNERFPSVER |
| Ga0257197_1086955 | Ga0257197_10869551 | F094786 | SRHSMTNWWSFLFILFVMASSLITVIGKPFLLTCDTYATSSTCTSRTSSETSTDCDACCGALLERMFDCPPCRYFVLNNRRQGSSCFCTVCFKQSRHRRRHEQAQNEQGSPPRFDY |
| Ga0257197_1088570 | Ga0257197_10885701 | F006461 | IHGWQLTVVNNVGPCGGRNYCTTKMFWANYQQKDLCQGQSMTLQGGDIPPTGLGIQENGEYCRCCGNEAGCTNPDNAGMQLVVHDGNCGSYQLNDPFYCGAHPPNAKAVVNVQMGGQWPNCVATLTRRGDAPGCNNGC |
| Ga0257197_1090773 | Ga0257197_10907731 | F052990 | LFSRYRRVLTVKAMQAKGLQVNEDDEYLDKIDFETQDLKQKVTERLEDVNRMDCYLYYVFGKIYEKIDDDIDTAIDWYQKGSDIDTDSCLKNHLLCNEAWRLKCKKRLMKLKTRKGLQVFIFNKNRED |
| Ga0257197_1090965 | Ga0257197_10909652 | F076781 | APPPRRGGLGLLGGLAGLLLCLLCLATLGLLGLFATFIAVTAYLGDVYRALRDANNSASGHYVNMAILMAAVCFAGYHKIRRAL |
| Ga0257197_1093423 | Ga0257197_10934231 | F000212 | GMFGVSITLNLSTTCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPKNAICDVKCEKPECEIKCPDKGCELMDCPKCVTVCKQPHCVTHCQAPKPECEAVCEEPKCDWKCHKPQCPKPKCELVCENPNCAPKVECCPCGNTGIKVNSPFPFFKEAENNKECCSCKQ |
| Ga0257197_1095683 | Ga0257197_10956831 | F083601 | MSGVVRSVQEGADRVGESLQSGANSVKRATVGGSETGDKVSETGSKASNRASEVGNRAADAIKGNP |
| Ga0257197_1097486 | Ga0257197_10974861 | F083601 | MSGVARSMQEGAHRVGESVQSGANSIKRATVGGSETGDKVSETGSKASNRASEIGNRATDAVKGNP |
| Ga0257197_1098043 | Ga0257197_10980431 | F027084 | FALGVIGLIFECYMNCTAKNAGQDCHLCYAGTIVAIVVGLFVASTELGHHGSLQNTLLRGVLWILFVILPFWGWFSWIGGLFVIIGGILYIMAYISGHTTAGTVSGVQTHSPLLG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |