3300030541: Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen0, Rep 3, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300030541
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118397 | Gp0306430 | Ga0265590
• Sample Name: Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen0, Rep 3, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 43134553
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Anaeromyces → Anaeromyces robustus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 34.4149
  • Long. (^o): -119.841
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046107	Metagenome / Metatranscriptome	151	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0265590_105418	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	1948
Ga0265590_118184	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Anaeromyces → Anaeromyces robustus	852
Ga0265590_122932	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	652

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0265590_105418	Ga0265590_1054182	F046107	MYFGKLYYAGILPFLSNKKEIKFRSNILKIDSVVSTKLSPDSSFIELLGRESPFVVIDDNPVFSLCLISTTSTLLVKFDILQY
Ga0265590_118184	Ga0265590_1181842	F046107	LYYAGIFPFLTNKKEIKPRSNIFKIDRMVSTKLSPDSLFIELLRRDSPFVEIDDDLVLSLCLISTTSTLLVKFGNLEYLSNNSSNELLMIGIALVKNSAKPTIFGTGDSDELFEK
Ga0265590_122932	Ga0265590_1229321	F046107	PFLSNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSSFVAIDDNPVLSLCLISTTSTLLDKFGILQYLSNNSSNELLMIAT