NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300030534

3300030534: Metatranscriptome of decayed wood fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF2-3S (Eukaryote Community Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300030534 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0131206 | Gp0296514 | Ga0257203
Sample NameMetatranscriptome of decayed wood fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF2-3S (Eukaryote Community Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size78554183
Sequencing Scaffolds34
Novel Protein Genes36
Associated Families32

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available24
All Organisms → cellular organisms → Eukaryota2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces litmocidini2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Panagrolaimoidea → Panagrolaimidae1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta2
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetatranscriptome Of Decayed Wood Fungal Communities From Pinus Contorta In National Forests From Montana, United States
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Decayed Wood Fungal Communities From Pinus Contorta In National Forests From Montana, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Montana
CoordinatesLat. (o)46.9233Long. (o)-110.8694Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000025Metagenome / Metatranscriptome5578Y
F000194Metagenome / Metatranscriptome1661Y
F000358Metagenome / Metatranscriptome1237Y
F002649Metagenome / Metatranscriptome539N
F006377Metagenome / Metatranscriptome374Y
F006461Metagenome / Metatranscriptome372Y
F006782Metagenome / Metatranscriptome364Y
F007160Metagenome / Metatranscriptome356Y
F008027Metagenome / Metatranscriptome340Y
F009116Metagenome / Metatranscriptome322Y
F010295Metagenome / Metatranscriptome305Y
F013276Metagenome / Metatranscriptome272Y
F013736Metagenome / Metatranscriptome268Y
F016629Metagenome / Metatranscriptome245Y
F018506Metagenome / Metatranscriptome234Y
F021039Metagenome / Metatranscriptome220Y
F021699Metagenome / Metatranscriptome217Y
F024455Metagenome / Metatranscriptome205N
F026472Metagenome / Metatranscriptome197Y
F028991Metagenome / Metatranscriptome189Y
F030647Metagenome / Metatranscriptome184N
F032546Metagenome / Metatranscriptome179Y
F042676Metagenome / Metatranscriptome157N
F047414Metagenome / Metatranscriptome149Y
F055331Metagenome / Metatranscriptome138Y
F057136Metagenome / Metatranscriptome136Y
F064331Metagenome / Metatranscriptome128Y
F064332Metagenome / Metatranscriptome128Y
F067279Metagenome / Metatranscriptome125Y
F071843Metagenome / Metatranscriptome121N
F078067Metagenome / Metatranscriptome116Y
F083663Metagenome / Metatranscriptome112Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0257203_1015211Not Available906Open in IMG/M
Ga0257203_1018605All Organisms → cellular organisms → Eukaryota839Open in IMG/M
Ga0257203_1019048All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces litmocidini832Open in IMG/M
Ga0257203_1019083All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina831Open in IMG/M
Ga0257203_1023986Not Available760Open in IMG/M
Ga0257203_1026597All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces litmocidini728Open in IMG/M
Ga0257203_1032142Not Available670Open in IMG/M
Ga0257203_1034289All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Panagrolaimoidea → Panagrolaimidae651Open in IMG/M
Ga0257203_1035316Not Available642Open in IMG/M
Ga0257203_1035785All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta638Open in IMG/M
Ga0257203_1036116Not Available635Open in IMG/M
Ga0257203_1040919All Organisms → cellular organisms → Eukaryota598Open in IMG/M
Ga0257203_1042525All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta587Open in IMG/M
Ga0257203_1043698Not Available579Open in IMG/M
Ga0257203_1043895Not Available578Open in IMG/M
Ga0257203_1044238Not Available576Open in IMG/M
Ga0257203_1044736Not Available572Open in IMG/M
Ga0257203_1045455Not Available568Open in IMG/M
Ga0257203_1046421Not Available562Open in IMG/M
Ga0257203_1046792Not Available559Open in IMG/M
Ga0257203_1047068Not Available558Open in IMG/M
Ga0257203_1047406Not Available555Open in IMG/M
Ga0257203_1048006Not Available552Open in IMG/M
Ga0257203_1048227Not Available550Open in IMG/M
Ga0257203_1050777All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff536Open in IMG/M
Ga0257203_1051399Not Available533Open in IMG/M
Ga0257203_1051992Not Available530Open in IMG/M
Ga0257203_1052864Not Available525Open in IMG/M
Ga0257203_1053641All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff521Open in IMG/M
Ga0257203_1053734Not Available520Open in IMG/M
Ga0257203_1055538Not Available511Open in IMG/M
Ga0257203_1056157Not Available508Open in IMG/M
Ga0257203_1056444Not Available507Open in IMG/M
Ga0257203_1057580Not Available501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0257203_1015211Ga0257203_10152111F047414ENDDQENRLPNGFMFPKKDAGMGMGYDNRMNHSFNKDLSPRMHRDNLILSPLFASNNHSGGFFNNFTPRYFSNMSHNNEGNKLGPDDFLMRPSPTHMDMDHTRFDKAMESLKMEMRHNTAPLMGDHHHQQGLNLDIDLIDDSYLHAPLTKSPNVQFSGSQPTSKCSFKKFGEWSLSPNASYIQRKKF
Ga0257203_1018605Ga0257203_10186051F083663MRGVLVQLFLLCFAVAVFSADPVKPVWPEQFVSQFGLNVASIAVKNETSFFYSDWHLKAQLVDYPTQCIGFNSAAIKQGCKIWFLPAGISISIPAQKVCCLWFPGLGAVPPDFLREFNYSGKVETVNDQFGKPHETYLWEGSGFAYWTEVKTGFDIQFRDGPGDTFWNFASLDAKVPPSNLFVLPPNCNDECPSFIRKDTELLHRVRPWTVLGL
Ga0257203_1019048Ga0257203_10190481F078067MGEVLDKRRAVFVSASFLSKQYKSIPTEALEDSIFFFGAKRSWLFPSNREEMLEARNQATKYLEFDEDFKSLILQKEQEGKVIWQRPAYDFKKVSAVIEAIVDPVSGENYLPLILDDSWWRNEFDPKDAKYTSNVDQIIANYTAGEHDYDAVMELIYQSNPTLAPTLYWAEEAEEK
Ga0257203_1019083Ga0257203_10190831F064332STINKTAPLLSKNTSPTRGGKPTVYFSFGGQSQGGACWDALLGDSNKATTFGQNAAKLVTSLYNLVGQKAYIGFDLDVEGTATKLPYIGSFVKAFRETAPYSTYPLQLCTLSGLASDQSDDHFKIGIMQQYGPAQQGINFLNMMVNNVDSSCTVMSTFWRAPALDFLPAKSKILGVWGEIIPSYILHNPGCTDGSTPLFSWIKQNQIGIGIWQWWAGSTNEITALINQIRA
Ga0257203_1023986Ga0257203_10239862F064331MYKEYTESAELFDVFKFESTNLFDDEPVQDNGTVVEDKKRARNGRKEYTNMRHVWTDDEVKKLLYVYAKQHGHIDQVTLDSLAKDMRKGITPAHINKWFKTLRAHQRKNVKVEKTHRRDARFTKAK
Ga0257203_1026597Ga0257203_10265971F078067NTAPQQSTIQHMAELLDKRRAVFVSASFLSKQYKSIPKEILDNSIFFFGAKRSWLFPTNREEMVEARSQPTKYLEFDEDFKSIILQKETSGLCCWLKQYNDFRKVSEFFEKIVDPVSGENYLPLVLDDNWWLNEFDLKDAKFASTVEQVISNYKAVEHDYDAVMELIYQSNPTLVPTLYWASEAEEKI
Ga0257203_1032142Ga0257203_10321421F009116TPTKPVWPNSFSASVLVHNNRDPRPTFFRWFYDFSQQKDRGDGLIQFRDEDWFSTILYDHSSKIEYNVFHQPQVAICFTNALNRSLPHPTFANVQYLGNGIINYVPVYHWFERDAARGITFQVWDTQDARRAIVRLDFDDERNHRSGSWTFFEFDRTPNNPAIYVIPAEILAQCTAAPEGVEIRSPAGL
Ga0257203_1034289Ga0257203_10342891F055331MFTKLVFFTVCVSYAYFQCTDKTTNVIDVSDDSNGNYNVIFNDVVGATYDPSGNPTCYQNEADLKLPGILGLISGTLTVEQAIVLDVGSVALLTLTKNDPLIGTVCQDGVSKNFLVPDKDCKFDFCVNETSLCKALSTPGTHTLGELEGDGGIGSTINLPTISDAIKPFITGQWKVGIKFQTSGGTIVAGIIIPSNAGEEWLWLEK
Ga0257203_1035316Ga0257203_10353161F024455TMEQIQMQSLLLKKSLGGQLVLSTIFCGVLYFAFGVKCTYFTIASGVWLLVTFLGLMAVRGQKPCFLFLTGFLSSLCNGVVLGLIVYGLFHGLVQVVTTFYGSLLFVYLLLILIVQGRISRLSFSLARQIKCGGDKCENGYEMGLVESSSDKENPTPSFTPTMTQQPNIVYVIPSPMQTVQGQTIYTVYPQQVYSNINMGPQ
Ga0257203_1035785Ga0257203_10357851F000358WLCEQIYPPEDGRSCIPPEKLEKAYAKGLIQRPTNAGQDEDLDEDMDSKIDQSIKDVWAYYDKKGKGFLTKSEAETFFNDAFEVLALRKGRKPKDLLGPNVSKGQAVSQSIQKLAKGSDRVDFSSFEEFINMSDMDEALAIFTGQTGPIDVKNNVQMVDTGKLSAQARADAGPKPVYREYPDD
Ga0257203_1036116Ga0257203_10361161F021039FEFVTTNKGRKALAYGSANANAEEGKQQEPLPPGETKTFDFLKGEGEAFPGYVVGFFGQYDENHVTHLGVYVAPLPEINYYARRAYILTYKKLQHDKHLIAEIAKKLGAEKEGDRFKNASLEDTDNNSSKIFLYFLDASLNHPELFKAVLEYL
Ga0257203_1040919Ga0257203_10409191F006461MNYLATKIFLFSLFLVFINGWVLQVNNRVNPCPGRNYCTVKLFWAGNAQEDLCEGGSKKFDQSQIPPTGLGIQENGMYCRCCGGEAGCINPDNAGMELIIHGTGRCEDFHLNPPFYCGAHPPNAEDIVDVKVNGTWPNCVATLTRKGNARGCNNSC
Ga0257203_1042525Ga0257203_10425251F013276MKVLLLLALFVTLSFCQIQLLSPSGRGFSEFNSHYAPCGQGSTQVGSAIQWEHGTIHQIEVQVIGAGGGGVLFDRYSCVLNGDDANNLDPVFPIEGALKVAIPDSDFQIYDLYVQAPGLHCVGQATMQLVYATANGQEYYQCQDLTITNTPNASSTLSVNALLVLLVAFGALLL
Ga0257203_1043698Ga0257203_10436981F021699SLSRRLKRKVQVGEKQSDKDVAAVKLEQIRSLASLQQISCFMLTLVTIIWLIFVLVVSLHAELDVLGTNSAGLMFLIAFGVIMAFQFVASIFHRIETMLNALANIPMNMDCRMVDEGKAKNDRMMQLKQQDMTPMGQENVAAKVARKLLMVDKRTATKANLLS
Ga0257203_1043850Ga0257203_10438501F000194ADRTASRRQARTAASGGTELVGVSQETLQEFQGAFMYYCLPDGNAGDDIMEEKLTEAGLDKLIRGLGWGGALKAKDMLRETGKTELDFIAFRDMMVARMKASETEEAIRAQFEKFDPKQSRRIPKGEMLTALRKLGRRPLTEAQIEELLQIPGISDGEYFYYEKFLESFFGQKGKASTD
Ga0257203_1043895Ga0257203_10438951F002649INFGFMSHYTGYNDGYGCFDYNPTRWLVAAFAMTIISEMTWVTVIVVFLISSLMFPSLKGLRAIYLSRLNPVFHWFLVFSRLGLIIALIGLLDYKRHYVCIRDNGERWIFNFTPIIVLAIMQVIGALLWFIARLIVVSIYKVPKVHHTQTTNVPTEIHIEKDSHHLHVIHGKNVEPDTNK
Ga0257203_1044238Ga0257203_10442381F006377MGGTFGGSDTWLTMGSGLIGETEFSHISSNHIELNFDVSIFLTSVDTNNGSDHFGKNDSISEVSLDGVGLLTRSGVLLGLSELLDESLIFMLKTSVESSLDSGSEELDELFVLEGSKILKGETSVGIFLGGTLS
Ga0257203_1044736Ga0257203_10447361F018506SPTPPTWPTEFSASVLISANDRRRPEFTRWFASYPQKKDRFDGLTEWKGEEYLAEILLDGNTQQQTNVFYDRESVVCFKHANNRTFPQPNFSNFDYRGLALIDYNVVLHWEERVRGDIYLEYFESQVGRNPVQFNVHDLRRQRVDTWRFWEFDASPQDPSVFTLPQAIQAVCN
Ga0257203_1044888Ga0257203_10448881F000025LIALSLAQVRPVWPTAASNSLYVHGWGDRNARHFLRFFYDESQGRERIDGAREHRGEMYWTSTILNTMTKREYFVVYQEDLVECFERPTNDSIPHPHFERARFVGKAEIEHNIVDHWIERSPEGRDHLQIFNRVDNGYVVRTDFDDGRRGHAVTFEFHEWNAAPQDPALFTLPSVILAICTSV
Ga0257203_1045455Ga0257203_10454551F006782LALIVLAIAQPTISNDFVSQNTVSRRFHNQTTTHSETTYESFTGRQRRIDTTYDSSTKITVYQFATNHTEYIDINGVHCDRRDFHEPWVPFFDWLKSSKQNGTCATNGKTGTLWVDVLRNGVDITLCSNGNTPIAFDVIDKNQVTLDVVIFNTFTPGVPSASNFQLPARCYTRGRNFFXNLISINNXIN
Ga0257203_1046421Ga0257203_10464211F067279WHESRLAAPYPSNPTLEQCFAPDSTVENLLGSYYRSTETGALAGSTYICRDYWDQIYGSFHSPDGYLAGWSVEDATGFHGYRYDASGQSGAYIHRALTRDRVKGFYWRGILAPQNYPTVQYEAFSRTSFTAKLDECEQVGPGFVERLHGPDYVPYVVNSSSIVSFSYLTFLLVAFTALLF
Ga0257203_1046792Ga0257203_10467921F016629ALFAAVVICQTPPNEPSDFSAFGALIERVHDYHRRLPGDIFEDYTNKRQRFDVDRHPSYGGRITIWRFYDKNLEYEYVETTKHCHKRSFNQTLHPAFDWVNRATHQGTCHDRHDHVTVGDLWRQGNGEDRRELCVARNSTLTPLWFEHHHGRAFSRIEEFRVFTSGAPDATKFSLPAPCAGN
Ga0257203_1047068Ga0257203_10470682F008027DIKILVANYGGKDVTAEAKKQAKIDQHFTANNGSFGDPLPNVQKHLHVIYSYNGVLGSVSIPEGSKFQPHPPKLVVLGALYGSADVTEKVRGLVPHGSDSASFQVENSHFGDPNPGVFKTFTVAYVRNGALKTHALKEHDHAHLN
Ga0257203_1047406Ga0257203_10474061F028991ASQEVLQDQRFKQKEHFAAINHALESKEETKRAPTGPLIGGRAGVYNPQKAHEGVVAIWEELQSLSKAAAEGDTINGPSLSLLSARYKKLPITWNINWSIADLSADNAQKVADEIRAKLDVAKTRLGDNGLPLPRLFGAV
Ga0257203_1048006Ga0257203_10480061F007160LTFSAIFTKDLLSTESKSQGDLLGESYNFDGKAQRGAIAYGLANTGGYSDSTTKGNYIKPEMVGKLPDKIALPGPGPLETVDEIPSATRYYDGSTKLNKITINCKIFANPTDCLHSSNCGWCGSNRGCIAGTNLGPLEPCVKSSYIFSAPFPNWNPQTRVINENVGGMSLTVVNK
Ga0257203_1048227Ga0257203_10482271F010295LQALSSEGVLSETKVVGLLGGSEGSEFVLMGSKGSSESSSLSVTKVGGVIFALDTFSDLFSISLVDDGQVLSDGLSDNLDFAELGGGGATSDLKGSKTVKFLLVLFESLDEFVV
Ga0257203_1050777Ga0257203_10507771F071843SVFLLGTQHWEWAVQLGLTAIVGLFASITLGTDYLALYAFICAFNLLALLGRLHVFGFDVSLYRLYEAHPAGCQNYFHLDPHHASNICYGYQAFTRLLAYLMVWLVAAQAFVSFYIYKEKSLAFGSVTSSGTTRTREEYGVLGSEDFGTIGAQS
Ga0257203_1051399Ga0257203_10513991F057136MGYVDKDLLRAYYQRDASDGRITEHEVKKAVEHAGGGHISDHHAGQLLRSLAGWDGVVSEHDFVHGISKYVETHGSSW
Ga0257203_1051992Ga0257203_10519921F016629ALVLFAAFVYCQTPPNEPSDFSAFGAVVERVHDYHRRLPGDIFEDYTNKRQRFDVDRHPSYGGKITIWRFYDKDLEYEYVESTKHCHKRSFNQTIHPAFDWVAKATRLGDCRDRYFHETVGDLWRESGSADYRRELCVAKNSTQTPLWFEHHHGRAFSRIMEFRVFTSGAPDVTKF
Ga0257203_1052864Ga0257203_10528641F032546SSYWNTDTVEVFTEAKLKKAYKVEINWELIKGQTGERMIYSNDAKPEPAPIVLAHLLGNDRFTFVFKDAIARILSDDAGKEAFEETFDKVVANVKLGPAHKGSVSKEGKTLNFNIEVKLDDFQNADRTVDSKELAKAIESLL
Ga0257203_1053641Ga0257203_10536411F042676HVEHTLGGMITFPQLTTGYGLISGLVGAAALVNPHLAYDIVGTPSRWVPMLESASGLYTLRLFGLQTLAVAALSVHTACSVKDPANRQTLSHLLAALNIGNGLIAAWMYREGILNPVGATLHSGLSFLFGVGFLMFSMKPIDTRLHTGSSASSS
Ga0257203_1053734Ga0257203_10537341F030647PEIETRLGCPVLNSDHVHLSDMTVYMTSSSVHLSFVIQHGGKIKPKIGPKVIHILLALEKLFTLLKFTAFIETCFPIKSRLATIL
Ga0257203_1055538Ga0257203_10555381F026472LYLAKPIGTLDPNQEVQITSFTIGPNPKRPNNKMDMKNSQTNDYVLFQCFSSTCREDITVFLKGKAMIIAAKRYEVGQDEEGEFTNVTTSKKTVNLPFPVTLSAFSLVKGEEEFTIKILKPTSSVAADAQIEIPIQVGHFDD
Ga0257203_1056157Ga0257203_10561571F008027MPHGIKILVANYGGKDVTKIAKEQHKANKHFTATNGAFGDPLPNVPKFLHVIYSFNGVLGSVSIPENKNFEPHPPKLVVLGASYGSADVTEKVRHLVPAGADNASFQVENAHFGDPNPGIFKNFTVAYVRNGELKTLALKEHDHAHLN
Ga0257203_1056444Ga0257203_10564441F032546ASGYYKGDMEDVFTEAKLKKPYKVEVNWDLVKTQTGEQKLYSNDDSKNEPAPVVIAHMIGNNRFSFFFCDIFRRLLADDLGKEAFQETFDKVVANFIVGPVHKATVAKDGKTLVFNIEVKLDDFQNCDRGVSAADTTKAVEALL
Ga0257203_1057580Ga0257203_10575801F013736PTISSTHQYGLPNQRAAPSTLSFGANNDDNGPNIGGWGKTVAIANPSIYFHSSGSIPVIKDTPVHAGYRHETTRITSVNKQSGKIEQHELSRKIPITGTERQVVSVKTDTTRRLDLTNNQFGAFKTTVSH

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