3300030512: Agave microbial communities from Guanajuato, Mexico - At.P.rz (v2)

Overview

Basic Information

• IMG/M Taxon OID: 3300030512
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053055 | Gp0104143 | Ga0268257
• Sample Name: Agave microbial communities from Guanajuato, Mexico - At.P.rz (v2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 451196603
• Sequencing Scaffolds: 19
• Novel Protein Genes: 21
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	2
Not Available	15
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → Hologalegina → IRL clade → Trifolieae → Trifolium → Trifolium pratense	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Agave Microbial Communities From California, Usa, And Mexico
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant surface

Location Information

• Location: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 20.6863
  • Long. (^o): -101.8747
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001976	Metagenome	609	Y
F003720	Metagenome / Metatranscriptome	472	Y
F003840	Metagenome	466	Y
F004469	Metagenome	437	Y
F011711	Metagenome / Metatranscriptome	288	Y
F020106	Metagenome	226	Y
F031315	Metagenome	182	Y
F033982	Metagenome	176	Y
F042608	Metagenome	158	Y
F061332	Metagenome	132	Y
F066299	Metagenome	126	Y
F071719	Metagenome	122	Y
F077883	Metagenome	117	Y
F085306	Metagenome	111	Y
F087839	Metagenome	110	Y
F090946	Metagenome	108	Y
F092971	Metagenome	106	Y
F099947	Metagenome	103	Y
F103985	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0268257_1069227	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	929
Ga0268257_1077761	Not Available	853
Ga0268257_1083323	Not Available	810
Ga0268257_1088950	Not Available	771
Ga0268257_1101795	Not Available	697
Ga0268257_1108501	Not Available	665
Ga0268257_1109449	Not Available	661
Ga0268257_1111036	Not Available	654
Ga0268257_1114117	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → Hologalegina → IRL clade → Trifolieae → Trifolium → Trifolium pratense	641
Ga0268257_1114441	Not Available	640
Ga0268257_1114951	Not Available	638
Ga0268257_1116787	Not Available	631
Ga0268257_1121929	Not Available	612
Ga0268257_1125777	Not Available	598
Ga0268257_1129715	Not Available	585
Ga0268257_1130656	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis	582
Ga0268257_1134446	Not Available	570
Ga0268257_1142025	Not Available	548
Ga0268257_1153073	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0268257_1069227	Ga0268257_10692271	F031315	DSEGEKLACAAQADTPQQTGTRSGKSYLRQYEKSTDEIQQQMTSVQVPASTPIPTKGKERPKEIRFDHVLKKPPGQGFDTPFRFDILAQLANIPARITIHELLRLSKETREALRDALANSESFLTCMPEIPNDDVQSPCPECHHAQSKVPAITFTAEDMLLKDNKHDRPLYYTGYIGSTCIERVQVDPGSALSIIPKRLLYFLGIPLYRLSATTTTIYGFNAGSSHLLGKI
Ga0268257_1077761	Ga0268257_10777612	F003720	NHCSEDRAHSSRDPIRFFLRYLKRMKEIIKSMMKKISFAVFAFALAMLIATPVAQATTVSEVQSMITQLKGKVQTIAISGKFAETKDRPGLLGQLDGVSLTLDQGKFCNSVKKVQDFKIKVTEMNSANKLNQDPTLGPTAQDLLNDADAIIAALNDLQVQSTGAPCN
Ga0268257_1083323	Ga0268257_10833231	F099947	MATPLGKKFSTAENQVSQCDEQTFGSNSEFRKAGAARAPLAKSSRKVSAETEKVLCEPTAVIWRNKEARPQSDSFACENLVVQFDQGRFEEVLSGGGPMLRARKHRRVSTTKVSNQKPEAEFCQHPSASCVANQVPCEPKSPLPRRIWKPKQKSSTEEKGKMLVCSNHKVTTAIIPLSNSRAAMPRAGLVLMSEATVPQRTRRVHDREAEAKV
Ga0268257_1088950	Ga0268257_10889501	F103985	MFDFFRLDDWKANMSRHLKSLGHLVYQASTLESFPNSSKHKKANALALRALRASLNEHLLPVFDRYDSAFAVWSILTSPELPRIINKLRRSRRDMSDEHCLMVQGIDSLEVQSDSQLDDCSSSYCDGCLEAQTLNMKLATKLENFLEKHKLLKEDNLVLKNELKDLCSNFELVLQEKEEITSERDSLRSQLDLALKEIDVLKSKNDCNDVVKNNEVLSSKLDFVLK
Ga0268257_1101582	Ga0268257_11015822	F042608	LKSLEAEQAEVGSAIDASTSALLDAEDKVKRAEEMIRKANLLLSKATQMRHEETARLEQLRAQSEELARQESSQRATLAEVEARLAQAVDFDEAELRSQALAQAADDRRTRLASLGDRIRSYHIRL
Ga0268257_1101795	Ga0268257_11017951	F071719	MRESKHKSQNLMDSQFQYHFQDNSSSFHQNNEPINYEKMLEAMTHAQNARNRDIDMMVESLRSHRPDVTYHSVRAEKSCCFGNQNSISEQPFELAQTPNFEKDIDSLASYPFPEIELENEYDLEPQLSDSILLPDSIMTPVSLPDFNLFPESTLDPAPIHNEVESPIFEDHIELDQLYTSEDTIDKLASSPFFGIELHEKCDLD
Ga0268257_1106894	Ga0268257_11068942	F042608	LLSKATQMRHEESARLKQLRARSEELAERKSSQRATLAETEARLAQAVDFDAAELRSQALAQAEDDRRTRLASLGDRIRSYHVRL
Ga0268257_1108501	Ga0268257_11085011	F020106	VYRQQTVFNTGASGKVTGTTRLKVRVENPAASRLDESSGKALNADHDNQAEL
Ga0268257_1109449	Ga0268257_11094491	F061332	HVFLAATKRCYLGDGNHIGANAQALEAIRSTLPKDYLLCVSNFNSAFAVWNKLTTTTTSELQVQIQEEESSGESEPQQCYMVQGNDSLEVQSETQLDSDDCSSSSCDDYDAHALNEELSIICEKLIEKYKILKKKSLEIENENKSLHSRLNNILQEKVEVYNERDSLRSQLELALKENEFLISKNDCHALLKKNENFSSKVDFVLKENVDLKNKIISISN
Ga0268257_1111036	Ga0268257_11110361	F004469	MDFMSPPTFDILNIQIWKVKMSLYLKALGIHVYLAISNDSYCSNGKNFEANAKALHAIKSTLNDDYLSRVSNVESAFVVWNIITSLGEKDLYYAGSDSDVGSNTSNTCFMVQGDNPLEVNSESDDENMSYDELTTFCHLILEKYDMLKRNNKNLKKEIACMHVEHDSFRDNIACLEKDNNILKKKFDCMHVENDSLKN
Ga0268257_1114117	Ga0268257_11141171	F001976	APHGHTSHMYTHVYTCTHCGRKGHLAKFCYDRLHTPNLAKNFVWVREGTNPHGPKKIWVPKTTPPIVFDVGVGSHMT
Ga0268257_1114441	Ga0268257_11144411	F090946	GNDSLEVHSEPHLDCDDNASSSCEDNIDPHALNEELSIVCEKLIENYKILKKKSLEIEKENKSLHSRLDCVLQEKVEVYNERDSLRSQLELALKENEFLKSKNDCHVILKKNENLSSKIDFVLKENVDLKNKIISISNDLDVCLKKNVVLQNKIDAHVCHARVVSHTSPIACHTSSSKINDDICLLKKKVDCLGSTMSQCALNHNRLETLVR
Ga0268257_1114951	Ga0268257_11149511	F092971	LNIFTFDEPTNNVSHEDIIQEPLIDILFENLFEEELMCLDEPTRDLLVNCTSLGESVDLSFEEIYGTELEFLGIHSEEVPTEKCDDDQFLNNRCRNMRKKSLKKVRLGRKRAKMTKRLA
Ga0268257_1116787	Ga0268257_11167871	F003840	MDFMTPPTFDILNIQTWKVKMSLYLKGLGIHVYLATIKDSYVNDSKYIEANSKAIHALKSTLNDEYLSRVSNIDSAFVVWNTIISL
Ga0268257_1121929	Ga0268257_11219291	F087839	CCFGNQDSISEQPFELIQTPNFEKDIDSLASYSFHEIELENEYDLEPQLSDSILLPDSIMTPVSSPDFNLFPESTLDPVPIHNEIESPIFEDHIELDQLYNFENPIDKLASSQFFDIELNEICDLDSQICDPVQLSESILTPVVLPNLSNILESVLIPPPIIPELESPILGHIPLLENTCGLEFQLLDLDPIPEPISTLEPLL
Ga0268257_1125777	Ga0268257_11257771	F087839	PEIELENDYDLEPQLSDSILFPDSIMTPVSSPDFNLFPESTLDPVPIHKEIESPIFEDHVELDQLYNFENPMDKLASSPIFDIELNEICDLDSHICDPVQLFESILTPVLLPNLNNILESVLIPPPIIPELESPILGHIPLLENTCGLEFQLLDLDPISEPISTPEPLLDLSHLPESVLVHVLPESKSIILSFHTPFWD
Ga0268257_1129715	Ga0268257_11297151	F077883	YFNPCIYNSMSFVIIKKGEIVGPKAYHSSFDDDQLM
Ga0268257_1130656	Ga0268257_11306561	F033982	NYLFPDMTSAPEAAHCGVAEEDILARMEVHAEKDIVVAEDDGPLGKGDVLRSFHHQARRPMSRKALLAGFLTIWLKKCVVPSSSGDIVHPTVLLPAVRLVHGHRLGLLPTMVCCIQRGLRALTEAFCRPMASRRGKGAVLPCDGPNPRVGLPYTYLMAWFALHCPSLIGAGEDPPQGVQTALLRRFEGRSWQK
Ga0268257_1134446	Ga0268257_11344461	F085306	VSDGPPNASSDARERVLAAVPALDDLLLRGRPGDQIQSDPVAVGGGAAWLLWFVLRPACLVIAVPVAGLRDDALAEALTRCNAFNSGMRWTVLSVAPWEGEQVATLSARLPLPPEDEGRWEAIGAAMEAVLREAGPARSVFEGLARDEE
Ga0268257_1142025	Ga0268257_11420251	F066299	ECLWELEPLVKSTNKLDVDTTDDAGGWYINEDLDFAYFPACESDSIPSDTSTDVDEDVWSAMDALTSLHVPIKSSFGTYQDNGDAQESVFMVPARRKGQRPILFGRIASEPMPHEESEGEDESPQFDHYEPRTLKMMKRMGYDLTNRPGLNFGKGRRTLLRSFVPKGKTPDYYHQTRRGLGY
Ga0268257_1153073	Ga0268257_11530731	F011711	MSDKRQKNQLQMVLAFAVEGRSEAPRARREGTESL