3300029948: Activated sludge microbial communities from Shatin wastewater treatment plant, Hong Kong - ST_Foam_2012.3

Overview

Basic Information

• IMG/M Taxon OID: 3300029948
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118580 | Gp0137215 | Ga0119873
• Sample Name: Activated sludge microbial communities from Shatin wastewater treatment plant, Hong Kong - ST_Foam_2012.3
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hong Kong
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 110954101
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Kordia → unclassified Kordia → Kordia sp.	1
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Activated Sludge Microbial Communities From Shatin Wastewater Treatment Plant, Hong Kong
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Activated Sludge Microbial Communities From Shatin Wastewater Treatment Plant, Hong Kong

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011936	Metagenome / Metatranscriptome	285	Y
F024534	Metagenome / Metatranscriptome	205	Y
F035771	Metagenome / Metatranscriptome	171	Y
F078696	Metagenome / Metatranscriptome	116	N
F091594	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119873_1016557	Not Available	1017
Ga0119873_1026758	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Kordia → unclassified Kordia → Kordia sp.	784
Ga0119873_1028742	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	754
Ga0119873_1033559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	692
Ga0119873_1052397	Not Available	535

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119873_1016557	Ga0119873_10165572	F078696	LNIQPSDAWQLTPKLFWSLWDMHLDKMEQSTGKAYTRPMSKTEFEELNDFLDSIHGNN
Ga0119873_1026758	Ga0119873_10267582	F024534	MNQQFINRINALPDVFMLASLVQFKYVQTISTPNDTNFKVGLAGGHEVFGKPEQYNAFIDKYLTWLESRK
Ga0119873_1028742	Ga0119873_10287421	F035771	VEAVEKSRQLRSSHFSLLTYWKYAPREKLTAALLDELF
Ga0119873_1033559	Ga0119873_10335592	F091594	MSENGITHYCLGNGELKCDGCQQEKNWQTLNQMPDTLRKSLQAQAQRIDDTDCILSGRPWYVGA
Ga0119873_1052397	Ga0119873_10523972	F011936	LDELSITGRMQRLESDHNMLVRDYSRLNDAIVKISESLTQLVVIQEQNKAIMACIERQQMSIDKLDARLDVLEVQQPQLLELRSWVLTWLGLIISAVLVAIIALVLK