3300029934: Human fecal microbial communities from mother in Denmark - 53_M

Overview

Basic Information

• IMG/M Taxon OID: 3300029934
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193747 | Ga0169760
• Sample Name: Human fecal microbial communities from mother in Denmark - 53_M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 124443021
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F062845	Metagenome	130	N
F087336	Metagenome	110	N
F088914	Metagenome	109	N
F101355	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169760_115976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1170
Ga0169760_118797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	994
Ga0169760_121438	All Organisms → cellular organisms → Bacteria	870
Ga0169760_125682	Not Available	724
Ga0169760_129012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	641

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169760_115976	Ga0169760_1159763	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKNFFHMFFFSFLKFI
Ga0169760_118797	Ga0169760_1187972	F088914	RKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENRKNSGKFIVFSAWYAAKALEMDVK
Ga0169760_121438	Ga0169760_1214381	F087336	DTPISSSMHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLVEQRQVAFLGIAFQILPLKSKQKRAP
Ga0169760_125682	Ga0169760_1256822	F026489	GRECSLLTPKENQKSASDFDALEPRKRGCTPLLTPKQWATPEKTEDSRLFGVKIF
Ga0169760_129012	Ga0169760_1290121	F062845	MEKTPFILHEKFRSDNNEQRKEHFQKEFERYIVDGLSNTVPSKSCAXFGILEFEE