3300029928: Baboon gut microbial communities from fecal samples in Kenya - M03

Overview

Basic Information

• IMG/M Taxon OID: 3300029928
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118445 | Gp0134443 | Ga0116643
• Sample Name: Baboon gut microbial communities from fecal samples in Kenya - M03
• Sequencing Status: Permanent Draft
• Sequencing Center: Duke University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 135534183
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Baboon Gut Microbial Communities From Fecal Samples In Kenya
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Baboon Gut → Baboon Gut Microbial Communities From Fecal Samples In Kenya

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Coordinates
  • Lat. (^o): 2.717
  • Long. (^o): 37.1
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F053097	Metagenome / Metatranscriptome	141	Y
F063247	Metagenome / Metatranscriptome	129	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0116643_1000016	All Organisms → Viruses	152832
Ga0116643_1000070	All Organisms → Viruses	90074
Ga0116643_1000126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	63590

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0116643_1000016	Ga0116643_100001611	F063247	MKKYPRTSTIEIDCDPCTGMGRQQNHYEAICKLLNVKPEPRISAFFGCWEWPITYKTAEDEAKAKEFLTDLYNSGLCRYASW
Ga0116643_1000070	Ga0116643_100007011	F053097	MFDIVNNKIQLSTEDLAIPPFRDFYNNAKDKQDALKKIEFIVWRYKWNSPYEAYPEKERTWRVAKDVLND
Ga0116643_1000126	Ga0116643_100012652	F032286	MVKWICQTVTLIRHRALIFDVRLFTGNAADDTLVTGSTFRFCRLVCLCVKRRNIILNSKRRSLLNSFLFRADNRTEQKTISPFSLALIFTFDFAALSERRSCPGLSPRRFVLLDALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNANFHAYG