3300029905: Fecal microbial communities from Fat line chicken in Harbin, China - MGJ17

Overview

Basic Information

• IMG/M Taxon OID: 3300029905
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133372 | Gp0289966 | Ga0247327
• Sample Name: Fecal microbial communities from Fat line chicken in Harbin, China - MGJ17
• Sequencing Status: Permanent Draft
• Sequencing Center: Inner Mongolia Agricultural University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 235732452
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Microbial Communities From Lean And Fat Line Chickens In Harbin, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Birds → Digestive System → Fecal → Unclassified → Fecal → Fecal Microbial Communities From Lean And Fat Line Chickens In Harbin, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: China: Harbin
• Coordinates
  • Lat. (^o): 45.73
  • Long. (^o): 126.73
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047755	Metagenome	149	Y
F053097	Metagenome / Metatranscriptome	141	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247327_1029964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1415
Ga0247327_1055416	All Organisms → Viruses	850

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247327_1029964	Ga0247327_10299641	F047755	GNLNMENEKVKYLINMINDMDIKNKLRLAICMSKSEWSGLIYNTKENYEKFDNMLKSIDEEYRTTLINFGKYKLVMFAMAKLMEMQATEQNQVALFLFNDVNTIIAKEKYYTG
Ga0247327_1055416	Ga0247327_10554162	F053097	MFDIKGSKIVFSTEDLAIPPFRDFYNNAKDKNLAKKQLEYVIWTYKWNSPYEAYPENERPQRVAQDVFGTDYEPDADVKELIKRFNEF