3300029904: Fecal microbial communities from Lean line chicken in Harbin, China - MGJ1

Overview

Basic Information

• IMG/M Taxon OID: 3300029904
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133372 | Gp0289958 | Ga0247319
• Sample Name: Fecal microbial communities from Lean line chicken in Harbin, China - MGJ1
• Sequencing Status: Permanent Draft
• Sequencing Center: Inner Mongolia Agricultural University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 214940855
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Microbial Communities From Lean And Fat Line Chickens In Harbin, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Birds → Digestive System → Fecal → Unclassified → Fecal → Fecal Microbial Communities From Lean And Fat Line Chickens In Harbin, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: China: Harbin
• Coordinates
  • Lat. (^o): 45.73
  • Long. (^o): 126.73
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036964	Metagenome / Metatranscriptome	169	Y
F047755	Metagenome	149	Y
F053097	Metagenome / Metatranscriptome	141	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247319_1000077	All Organisms → Viruses	98224
Ga0247319_1002315	All Organisms → cellular organisms → Bacteria	11300
Ga0247319_1008997	All Organisms → cellular organisms → Bacteria	3739

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247319_1000077	Ga0247319_1000077150	F053097	MFDIKGDKIVFSTQDLAIPPFKDFYNNAKDKNLAKKQLEYVVWRYKWNTPYEAYPENERSERVALDVFGAKYEPDASVKELIKRFNEF
Ga0247319_1002315	Ga0247319_100231513	F036964	MISFLKIAFPALMVIGALGSLVVNIISKGDKATSLQWIGASLLYTALLFRNK
Ga0247319_1008997	Ga0247319_10089973	F047755	MQQEKVKYLIDMINNMDIKDKLRLAICMSQSKWSGLIYNTKDYYERFDSMLKDIDEEYRTTLINFEKYKIVMXXXXMAKLMEMETTEQNKVALYLFNDIK