3300029891: Groundwater microbial communities from Horonobe Underground Research Laboratory (URL), Japan - horonobe_ig2158

Overview

Basic Information

• IMG/M Taxon OID: 3300029891
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133313 | Gp0288075 | Ga0246100
• Sample Name: Groundwater microbial communities from Horonobe Underground Research Laboratory (URL), Japan - horonobe_ig2158
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Berkeley
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 179595433
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Groundwater Microbial Communities From Horonobe Underground Research Laboratory (Url), Japan
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Horonobe Underground Research Laboratory (Url), Japan

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → planetary subsurface zone → groundwater
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Japan: Horonobe URL
• Coordinates
  • Lat. (^o): 45.045278
  • Long. (^o): 141.859444
  • Alt. (m): N/A
  • Depth (m): 250

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000060	Metagenome / Metatranscriptome	2944	Y
F081380	Metagenome / Metatranscriptome	114	Y
F083668	Metagenome / Metatranscriptome	112	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0246100_113346	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2180
Ga0246100_133406	Not Available	769

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0246100_100498	Ga0246100_1004986	F000060	MATKLNSEFNYRYQVMGETTWEKIKHLKNFLEGRKRAAVLEEVQKLKTAAKLSKLKHLKEHLGLEHEILELEAEIIEAQSFEADQTECWELNRQEIVILEKLLAELYEIAEPLRIKGYTDEQMFEANAANEFTVMIGKEILAELIANGRPSAAKIRNAMSNPVTWNALIQCGLIPQGNETLMFSNDPQHIKLSLPDAPNIVKKIKDAKK
Ga0246100_113346	Ga0246100_1133462	F081380	MKSAPEYLNNPDGKRMWFQDFRPHFNYLVLDPIKRFPLKMDDMLIGFVFMSCCIDYLSGFWWGENRELGMSRQAYVGFINEYFRPRGRYNAKGLYDSLRNGLVHLFTIKNKMYELTFDEPERHLTLSRIGYTVLDAGSFRKDLIDAANLYFDEVEKNPQLLNKAFERYERDGFVHWID
Ga0246100_133406	Ga0246100_1334063	F083668	MKKWSPDKITAVILIVGCFGLLFTGIDGEVKAILTIAAGYLFGTSIIERKK