3300029877: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37879

Overview

Basic Information

• IMG/M Taxon OID: 3300029877
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283960 | Ga0245326
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37879
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 113584437
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F042936	Metagenome	157	N
F047126	Metagenome	150	N
F071325	Metagenome	122	N
F078004	Metagenome	117	N
F087336	Metagenome	110	N
F088921	Metagenome	109	N
F089005	Metagenome	109	N
F092228	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245326_100057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	197993
Ga0245326_100296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	53150
Ga0245326_100509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	31031
Ga0245326_100621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	25921
Ga0245326_100947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	15620
Ga0245326_100949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	15590
Ga0245326_101255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11159
Ga0245326_103630	All Organisms → cellular organisms → Bacteria	3926
Ga0245326_110730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1415

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245326_100057	Ga0245326_10005760	F092228	MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNKIYYINISDGNLYTAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPAKIADKCDCDELLATKNFLYCYTINYILPRGMANSWVKGYLIDQLAIS
Ga0245326_100296	Ga0245326_1002961	F089005	LTKSKQCSIITLALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTK
Ga0245326_100509	Ga0245326_10050912	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCEFQGFLTQNPAALVETDDIFDVSDTPHGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESSCILCSLLRYFHILSKKLQKTC
Ga0245326_100621	Ga0245326_10062113	F087336	MHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDKILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKKSTLRGKLSKCSFRKQSAN
Ga0245326_100947	Ga0245326_1009472	F042936	MGRGGGKGRVWKPKEGIMKTSGIVDRGEDTIRHFEKVEQEGALTPPYLGKVYFRSRLRGK
Ga0245326_100949	Ga0245326_1009491	F071325	IVFRDFPSRLRFHKFQYCSIFKVLLALLLDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRSPAAFLLVHRFYLAFEELLSCATAYL
Ga0245326_101255	Ga0245326_10125514	F029444	MEVSEQLTGFEPEDLMSWPASNLQRPFREDFSLQKSGIIAEKGSQIFGRRFVGLDGLRKRRPFSFQKGRW
Ga0245326_103630	Ga0245326_1036301	F071325	LLSDSSIIISKVVLFVKHFFDIFLSFPNAFSKAFHPYAVRFPAAFLLVHRFYLAFEELLSCVTAYL
Ga0245326_110730	Ga0245326_1107302	F088921	LGATIRLYKIGTGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVVNKSAMIRDKMRRK
Ga0245326_115999	Ga0245326_1159992	F078004	LSSRNTDLLFRKSSTGGLSAVAGSAAXXXXXXXXXXLIITVIDALYRLTVDADRMAWMSQGAAERIPPLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLIIGTIFHNAF