3300029870: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37543

Overview

Basic Information

• IMG/M Taxon OID: 3300029870
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283946 | Ga0245312
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37543
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 130786085
• Sequencing Scaffolds: 3
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052660	Metagenome	142	N
F090484	Metagenome	108	N
F092228	Metagenome	107	N
F098313	Metagenome	104	N
F099406	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245312_100009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	390852
Ga0245312_100115	Not Available	90857
Ga0245312_113881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1473

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245312_100009	Ga0245312_100009255	F092228	MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNIVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVKLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNNCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS
Ga0245312_100115	Ga0245312_10011543	F099406	MAEIGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGGKVLESLGMVSTGVDSTYLDLSIFPSTSGTLDEDSYAKVIDAYNNGITLGKLSFYYFSLDYFLDNDNSELKIIAVLFNNTNSKEDVSGSYIDIEMVTYVVSQDKTYRAIANTATLSNDMLSYLKFMAKTPNVVTTLASLPIDAHNIIANVASATNLSMAVSAEDVGREWQVRVNNTTGTDITQPLPTSGLFQSMSGDSVVVPKNSFIELSIWYINDKLVIRVGEQA
Ga0245312_100115	Ga0245312_10011564	F090484	MKLQLGRNINISLRLLEQRSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMANAEACCAEVGTSVAGVCGRVSRRMKSYNNTVSDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYMYVKAEQFKEKIENMDISIQSLPNINTTVDNDKELDGESVFKDIPFEELSFYNNTYLYPSSQYSSL
Ga0245312_100115	Ga0245312_1001157	F098313	MKEKEFDFVIYPLKLIITIGLDYKTLCDRFENAELDHEGEWGDEGDLDSEVSFMNLVRDKGDDRAFKLLWNFQSENDMTIQNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCADEMFGFLEEEKDGKEE
Ga0245312_113881	Ga0245312_1138812	F052660	MCILRVLPEKTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGRFFYGGILMGIVLPIPSHRAKSHDFACWWPAAAGHSRSADALPGKSNS