Sample 3300029858

Overview

Basic Information
IMG/M Taxon OID	3300029858 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133139 \| Gp0283934 \| Ga0245300
Sample Name	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37314
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	204929011
Sequencing Scaffolds	9
Novel Protein Genes	9
Associated Families	8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	United Kingdom: London
Coordinates	Lat. (^o)	51.5	Long. (^o)	-0.12	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F032286	Metagenome / Metatranscriptome	180	Y
F039198	Metagenome	164	Y
F047125	Metagenome / Metatranscriptome	150	N
F047126	Metagenome	150	N
F047755	Metagenome	149	Y
F055775	Metagenome	138	N
F068855	Metagenome	124	N

Family

Category

Number of Sequences

3D Structure?

F026592

Metagenome / Metatranscriptome

197

F032286

Metagenome / Metatranscriptome

180

F039198

Metagenome

164

F047125

Metagenome / Metatranscriptome

150

F047126

Metagenome

150

F047755

Metagenome

149

F055775

Metagenome

138

F068855

Metagenome

124

Scaffold	Taxonomy	Length	IMG/M Link
Ga0245300_100003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	515926	Open in IMG/M
Ga0245300_100041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	242104	Open in IMG/M
Ga0245300_100917	Not Available	37740	Open in IMG/M
Ga0245300_107673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3533	Open in IMG/M
Ga0245300_108288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3186	Open in IMG/M
Ga0245300_113238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1815	Open in IMG/M
Ga0245300_117056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1362	Open in IMG/M
Ga0245300_118383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1259	Open in IMG/M
Ga0245300_132568	Not Available	674	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0245300_100003

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

515926

Open in IMG/M

Ga0245300_100041

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

242104

Open in IMG/M

Ga0245300_100917

Not Available

37740

Open in IMG/M

Ga0245300_107673

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

3533

Open in IMG/M

Ga0245300_108288

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

3186

Open in IMG/M

Ga0245300_113238

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1815

Open in IMG/M

Ga0245300_117056

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74

1362

Open in IMG/M

Ga0245300_118383

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

1259

Open in IMG/M

Ga0245300_132568

Not Available

674

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0245300_100003	Ga0245300_100003272	F039198	MKLTIAEIQGTKYVQIYLTEEELQKEETKDLAQKYKQEKYSVAIFVTGKENYPEILEKIITKQVELNKNVC
Ga0245300_100041	Ga0245300_100041224	F047755	MEQEKVKYLIDMINNMDIKDKLRLAICMSQSKWSELIYNTKEYYEKFDNMLKDVDEEYRTTLIDFGKYKLVMFAMAKLMEIKTIEQNKVALYLFNIIES
Ga0245300_100917	Ga0245300_10091710	F055775	MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDAPKYTIDIINANSGTVTAIALN
Ga0245300_107673	Ga0245300_1076732	F026592	XQGIAALAAQGGVATLTEQSDATFSVMQLFSADRE
Ga0245300_108288	Ga0245300_1082881	F026592	CQNRLRTASPQGIAALAVQGGVATLTERSDATFAGKQFSSADRE
Ga0245300_113238	Ga0245300_1132383	F068855	MVPTISRCPSSSVPTVEAQGPQVRKSLALQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGTVW
Ga0245300_117056	Ga0245300_1170563	F047126	MTNISQTQAGFKSKSLGILCGSQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIARFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0245300_118383	Ga0245300_1183831	F032286	SNVPPVFSVRSMVKWVCQIVTPIRHRALIFDARLFAGTAADDALVTGSPFRFCRLVCLCVKRRNIKPDSKRRSLPDSALFHADNRTEQKTILPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKRAEI
Ga0245300_132568	Ga0245300_1325681	F047125	MDVALLLMVLGVMLSGFWAADALDHMRKEIIRQEGKRRGW

Scaffold ID

Protein ID

Family

Sequence

Ga0245300_100003

Ga0245300_100003272

F039198

MKLTIAEIQGTKYVQIYLTEEELQKEETKDLAQKYKQEKYSVAIFVTGKENYPEILEKIITKQVELNKNVC

Ga0245300_100041

Ga0245300_100041224

F047755

MEQEKVKYLIDMINNMDIKDKLRLAICMSQSKWSELIYNTKEYYEKFDNMLKDVDEEYRTTLIDFGKYKLVMFAMAKLMEIKTIEQNKVALYLFNIIES

Ga0245300_100917

Ga0245300_10091710

F055775

MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDAPKYTIDIINANSGTVTAIALN

Ga0245300_107673

Ga0245300_1076732

F026592

XQGIAALAAQGGVATLTEQSDATFSVMQLFSADRE

Ga0245300_108288

Ga0245300_1082881

F026592

CQNRLRTASPQGIAALAVQGGVATLTERSDATFAGKQFSSADRE

Ga0245300_113238

Ga0245300_1132383

F068855

MVPTISRCPSSSVPTVEAQGPQVRKSLALQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGTVW

Ga0245300_117056

Ga0245300_1170563

F047126

MTNISQTQAGFKSKSLGILCGSQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIARFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC

Ga0245300_118383

Ga0245300_1183831

F032286

SNVPPVFSVRSMVKWVCQIVTPIRHRALIFDARLFAGTAADDALVTGSPFRFCRLVCLCVKRRNIKPDSKRRSLPDSALFHADNRTEQKTILPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKRAEI

Ga0245300_132568

Ga0245300_1325681

F047125

MDVALLLMVLGVMLSGFWAADALDHMRKEIIRQEGKRRGW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029858: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37314

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences