Sample 3300029840

Overview

Basic Information
IMG/M Taxon OID	3300029840 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133139 \| Gp0283903 \| Ga0245268
Sample Name	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35505
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	178448464
Sequencing Scaffolds	9
Novel Protein Genes	11
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	United Kingdom: London
Coordinates	Lat. (^o)	51.5	Long. (^o)	-0.12	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F036964	Metagenome / Metatranscriptome	169	Y
F042936	Metagenome	157	N
F047125	Metagenome / Metatranscriptome	150	N
F050793	Metagenome	145	N
F074964	Metagenome	119	N
F087336	Metagenome	110	N
F090484	Metagenome	108	N
F090514	Metagenome	108	N
F099269	Metagenome	103	N
F099406	Metagenome	103	N

Family

Category

Number of Sequences

3D Structure?

F013656

Metagenome

269

F036964

Metagenome / Metatranscriptome

169

F042936

Metagenome

157

F047125

Metagenome / Metatranscriptome

150

F050793

Metagenome

145

F074964

Metagenome

119

F087336

Metagenome

110

F090484

Metagenome

108

F090514

Metagenome

108

F099269

Metagenome

103

F099406

Metagenome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0245268_100110	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	148149	Open in IMG/M
Ga0245268_100561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	51117	Open in IMG/M
Ga0245268_100574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	50393	Open in IMG/M
Ga0245268_100688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	43328	Open in IMG/M
Ga0245268_100736	All Organisms → cellular organisms → Bacteria	40372	Open in IMG/M
Ga0245268_100750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	39724	Open in IMG/M
Ga0245268_100933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA	33221	Open in IMG/M
Ga0245268_101545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	20703	Open in IMG/M
Ga0245268_116243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1193	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0245268_100110

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

148149

Open in IMG/M

Ga0245268_100561

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

51117

Open in IMG/M

Ga0245268_100574

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

50393

Open in IMG/M

Ga0245268_100688

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

43328

Open in IMG/M

Ga0245268_100736

All Organisms → cellular organisms → Bacteria

40372

Open in IMG/M

Ga0245268_100750

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

39724

Open in IMG/M

Ga0245268_100933

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA

33221

Open in IMG/M

Ga0245268_101545

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

20703

Open in IMG/M

Ga0245268_116243

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

1193

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0245268_100110	Ga0245268_100110106	F074964	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGTDLKAICKTLEIPAEYAVKVAALAKDKKRLVTVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKEKGIEAKTAGWCAENVGYGSEYKPFGFATAETLETKSSAKWIIKETDEYKSTYVAVKIKFYSIRTVAKCVSEYLAHESNQQ
Ga0245268_100110	Ga0245268_100110137	F090484	MKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRMTDSTFVARRYRVNGVQLTLGCGKVNLPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVSMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSAWSKEKLATVKADMANAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKSGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISTQSLPNISITVDNDKELDGESVFKDIPLEELSFYSDIYLYPSSQYSSL
Ga0245268_100110	Ga0245268_100110157	F099406	MAEVGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSDMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGGKVLESLGMVSTGVDSTYLDLSIFPSTSGTLDEDSYAKVIDAYNNRITLGKLSLYYFSLDYFLDNDNSELKIIAVLFNNTNSKEDVSGSYIDIEMVTYVVAQDKTYRAIANTATLSNDMLSYLRFMAKTPNVVTTLASLPIDAHNIIANVASATDLSMAVSAEDVGREWQVRVNNTTGADITQPLPISGLFQSMSGDSVVVPKNSFIELSIWYINDKLVIRVGEQA
Ga0245268_100561	Ga0245268_1005613	F013656	MKKIYKEPNKSETETTINVLYSENILSICTNKVDLQKKLNKLLGEPAKEHKIKRSIAGSTWNISLDDKTKIQKIILKANIYDM
Ga0245268_100574	Ga0245268_10057438	F087336	MHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIRLAEQRQVAFLEIAFQILPLKSKQKKSPPRGKLSKCSFRK
Ga0245268_100688	Ga0245268_10068840	F090514	MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRTRAGSSLPLIPASIFF
Ga0245268_100736	Ga0245268_10073616	F050793	MRERGAIAPNDAEREKTMRKYEVDVPENVEMADIQAIQTRIKKHNLLTVVLLIPLFAGCALRESSETLGGIVFVLSIALMVLGFISGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSDYRVQLGVLDEKTGAWENDEQDEVFPTLADVREYASQEGYEPMDVDFEQMTDEEFQQFLDAHRI
Ga0245268_100750	Ga0245268_10075021	F036964	MEILKIVFPLLMVAGALGSLVVNIASKGDWATSLQWLGACLLYTALTARNVS
Ga0245268_100933	Ga0245268_10093326	F099269	VHGVLLSVQVGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYR
Ga0245268_101545	Ga0245268_1015457	F042936	VYDLWGRGGGKGRVWKTKEGIMKTSGIVNRGEDTIRNFEKVEQEGALTLPYLGKVYFRSRLRGKG
Ga0245268_116243	Ga0245268_1162434	F047125	MDVALLLMVLGVMLSGFWAADALDHMRKEILRQEGKRRG

Scaffold ID

Protein ID

Family

Sequence

Ga0245268_100110

Ga0245268_100110106

F074964

MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGTDLKAICKTLEIPAEYAVKVAALAKDKKRLVTVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKEKGIEAKTAGWCAENVGYGSEYKPFGFATAETLETKSSAKWIIKETDEYKSTYVAVKIKFYSIRTVAKCVSEYLAHESNQQ

Ga0245268_100110

Ga0245268_100110137

F090484

MKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRMTDSTFVARRYRVNGVQLTLGCGKVNLPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVSMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSAWSKEKLATVKADMANAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKSGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISTQSLPNISITVDNDKELDGESVFKDIPLEELSFYSDIYLYPSSQYSSL

Ga0245268_100110

Ga0245268_100110157

F099406

MAEVGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSDMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGGKVLESLGMVSTGVDSTYLDLSIFPSTSGTLDEDSYAKVIDAYNNRITLGKLSLYYFSLDYFLDNDNSELKIIAVLFNNTNSKEDVSGSYIDIEMVTYVVAQDKTYRAIANTATLSNDMLSYLRFMAKTPNVVTTLASLPIDAHNIIANVASATDLSMAVSAEDVGREWQVRVNNTTGADITQPLPISGLFQSMSGDSVVVPKNSFIELSIWYINDKLVIRVGEQA

Ga0245268_100561

Ga0245268_1005613

F013656

MKKIYKEPNKSETETTINVLYSENILSICTNKVDLQKKLNKLLGEPAKEHKIKRSIAGSTWNISLDDKTKIQKIILKANIYDM

Ga0245268_100574

Ga0245268_10057438

F087336

MHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIRLAEQRQVAFLEIAFQILPLKSKQKKSPPRGKLSKCSFRK

Ga0245268_100688

Ga0245268_10068840

F090514

MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRTRAGSSLPLIPASIFF

Ga0245268_100736

Ga0245268_10073616

F050793

MRERGAIAPNDAEREKTMRKYEVDVPENVEMADIQAIQTRIKKHNLLTVVLLIPLFAGCALRESSETLGGIVFVLSIALMVLGFISGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSDYRVQLGVLDEKTGAWENDEQDEVFPTLADVREYASQEGYEPMDVDFEQMTDEEFQQFLDAHRI

Ga0245268_100750

Ga0245268_10075021

F036964

MEILKIVFPLLMVAGALGSLVVNIASKGDWATSLQWLGACLLYTALTARNVS

Ga0245268_100933

Ga0245268_10093326

F099269

VHGVLLSVQVGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYR

Ga0245268_101545

Ga0245268_1015457

F042936

VYDLWGRGGGKGRVWKTKEGIMKTSGIVNRGEDTIRNFEKVEQEGALTLPYLGKVYFRSRLRGKG

Ga0245268_116243

Ga0245268_1162434

F047125

MDVALLLMVLGVMLSGFWAADALDHMRKEILRQEGKRRG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029840: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35505

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences