3300029836: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Gly2 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300029836
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116197 | Gp0321312 | Ga0307325
• Sample Name: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Gly2 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31984225
• Sequencing Scaffolds: 16
• Novel Protein Genes: 18
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	9
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	1
All Organisms → Viruses → environmental samples → uncultured virus	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaU1.Bin231	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017318	Metagenome / Metatranscriptome	241	Y
F020914	Metagenome / Metatranscriptome	221	N
F022205	Metatranscriptome	215	Y
F024821	Metagenome / Metatranscriptome	204	Y
F025291	Metagenome / Metatranscriptome	202	N
F029768	Metagenome / Metatranscriptome	187	N
F031111	Metagenome / Metatranscriptome	183	N
F051952	Metatranscriptome	143	N
F052016	Metagenome / Metatranscriptome	143	N
F059033	Metagenome / Metatranscriptome	134	N
F068879	Metagenome / Metatranscriptome	124	N
F070158	Metagenome / Metatranscriptome	123	N
F070165	Metagenome / Metatranscriptome	123	N
F070166	Metatranscriptome	123	N
F077342	Metagenome / Metatranscriptome	117	N
F082734	Metagenome / Metatranscriptome	113	N
F099361	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0307325_100286	All Organisms → cellular organisms → Bacteria	3624
Ga0307325_101890	Not Available	1819
Ga0307325_102050	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	1761
Ga0307325_103438	Not Available	1390
Ga0307325_104962	Not Available	1161
Ga0307325_109526	All Organisms → Viruses → environmental samples → uncultured virus	804
Ga0307325_110609	Not Available	756
Ga0307325_111356	Not Available	727
Ga0307325_112248	Not Available	695
Ga0307325_112579	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211	683
Ga0307325_113247	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	662
Ga0307325_113586	Not Available	652
Ga0307325_116359	Not Available	585
Ga0307325_118745	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaU1.Bin231	540
Ga0307325_120343	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	516
Ga0307325_120623	Not Available	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307325_100286	Ga0307325_1002861	F068879	NRPVYVIGAPWRDNRVTKEEGFVAGATDCPGYRRGLPPGVTAFANARINK
Ga0307325_101890	Ga0307325_1018901	F082734	LFGGQTITWQAFDEEEAKKRGISYSYWKDIHYSQETAEKVPFFVLSDDGIVVPIYSISFIRSGIVLRSAFGEFHLPNSGSRYYHDRAKMLVLTENRSQTEDYINYKSTPGALLRGAVVRMAANGLDVGEIVKILCVSPKSQRATKIKQFYKSEECTRMVREEVRKILENCGVTEEAVVKMLLEAREVALEKKDAANMLRAAENFVDMYGMKEKDRQIDTRTFEVESEVEDLKKLEKVSDRLKLTQKEEKDAQTN
Ga0307325_102050	Ga0307325_1020502	F024821	ESSTRERYLRTLMRYQEQHGREKASAIQERFWKDRERVVSESAEEIDWFPSWKKNQVLESLLEKTYRDLIREMELEGLP
Ga0307325_103438	Ga0307325_1034383	F070165	MVRMRRRGRNARRSTQTLTHTAVFTMGGPTSVSANNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSASGSTVFTFQPMSDLNVSVKVGVLATFEYKYPTGALPDYEPA
Ga0307325_104962	Ga0307325_1049621	F099361	KMNIKNTDSISFLIANSGNQKIYHPVSEFKADILADVEADKTLQDTIIQGVLDNVAAPILATESTITENSNDPGIVIELTKNTFIEGDSENAGNWIIDFGATDLILNTITKVSATEMRITTTGTAEEGTIRILALKDCFDAPIVDSNVLEIEVRTT
Ga0307325_108815	Ga0307325_1088152	F020914	MAIYQKYGFAIDQILSEDQALPNATSGDSTNTIKLDAVADDGLHIVVCAASTTVELASDATLEIRPTVGATDGAVTTVLPSILIKQGVQSDASWLPGEMICQFNIPAKLIGSARYLKLTYVTSANESDDKVEAFSV
Ga0307325_109526	Ga0307325_1095261	F017318	YDISCDGINPSVGTWNFSLNDLPSYTEFTVLFDMYKIDRIEIEWYPEYTVLSDGGVTSPAVDVQFNSAIDPVGNTVTNVSDVLQYRTLKGTAINKIHKRSLVPAYLMDGIVPCACYISCTSPSSNLWGVVYGIAPTGTAMLFKSRAKFYLSFVQSR
Ga0307325_110609	Ga0307325_1106091	F070166	FLVSKIAYGKDFSLIELAALFHNQLWLQAKCSTDVQFRERYGNTLEALAKILKDCNFSRGLQPGTIKSVKAKLLAQEWDFLFPQRNMQKMEAQLRNSIFTTWRKPQGVEISKLPPKKHIGKGYRDHGTAPKPELDGSPSWQEVGSEFSNLEREDTENLLFLQKVVSGEIVYEPGTNKEIISRIKRTIQVKEAIKRIDPNWRNTQIAEASGGKVIPKKVG
Ga0307325_111356	Ga0307325_1113561	F025291	KASKNKQPNQRRGGYKPSTKTKHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK
Ga0307325_112248	Ga0307325_1122481	F025291	SAWRVITYNYHLGDHSSTGLYTLNVGADQRYMSFQTLLSTDEFQNMSVVYNEYKIHKAVFTSLPTTNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKSLTAQSCEWDLKGLGPNFNVWLDTGATIPGQFQIGNYIFGSIPINLGWEVKFQLVVEFTNPK
Ga0307325_112579	Ga0307325_1125791	F031111	RRKKEKSRFLIGKKRCISNIPQNSYYQTIVNIPAAYNFSCYYPQNLPSSQIGKQVKEILKPLNLALIKLSKPKLTFS
Ga0307325_113247	Ga0307325_1132471	F070158	YYQEGATGLGKLDASSEKPSTEASSPSDAAPEANGNEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAERAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYIEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKH
Ga0307325_113586	Ga0307325_1135862	F059033	MAITTANLQALAAAWDVGTEFEPIVIDMLRISSFLRTAVAAKASHGIKHEYRFFKSLPVAVFREIGEGIVPQKIGPDKAQIDLKELVFDLYEDYQGILQYPGGKEGWLKDYYPIALMALTNAITQSSFYGNIPGFGYEKAFKGFHQYAKDLGQVVAQKGGSSGSCSSIFAVRWEKFD
Ga0307325_116359	Ga0307325_1163591	F051952	PDHFTSTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVSLEETCILFLSFEKMVQKMSQHEAYRAKYGSDVFTFRAVLTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNF
Ga0307325_118206	Ga0307325_1182061	F029768	LDSVLKEQAKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIELKQREGYSLEQAKANYFLFQTVEYLEFLEQAKVMSNHSLQFMERATEKMNGILQETESKIEQAMKEIAQEQEK
Ga0307325_118745	Ga0307325_1187451	F052016	PHGAGGRGRRKGAAMSDRISVVFSGTNKNFLYNCEIPISMLPRTGERIRLSIPGHSDIRCYVEDMEWQYAELEKRIDISIVARVKMLRED
Ga0307325_120343	Ga0307325_1203431	F077342	MARTLNEFIVSTGNYVYEITDAKMAGVDLTDFNVAVLLHCVLANELERDFIVFSKGRIEQVFDISKQYYLLYSPTYCRNIGNGIFIVSLPFWRMQHIAESENSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLT
Ga0307325_120623	Ga0307325_1206231	F022205	PTRPHAVEVRFAHINPVGVRFRVLAGNNEEVYVSPALVAGPAPQVFRATLPRNTDFALYGGTQIVMDFAGPATYAIRLIMAHKENSA