Sample 3300029833

Basic Information
IMG/M Taxon OID	3300029833 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0116197 \| Gp0321327 \| Ga0307340
Sample Name	Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Pro1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Pro1 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	51484420
Sequencing Scaffolds	20
Novel Protein Genes	24
Associated Families	21

Dataset Contents

Total Genome Size

51484420

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	1
Not Available	15
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus → unclassified Methanoculleus → Methanoculleus sp. MH98A	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Archaea

Not Available

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus → unclassified Methanoculleus → Methanoculleus sp. MH98A

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038

Ecosystem Assignment (GOLD)
Name	Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
Type	Engineered
Taxonomy	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Ecosystem Assignment (GOLD)

Name

Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Type

Engineered

Taxonomy

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Wisconsin
Coordinates	Lat. (^o)	44.11	Long. (^o)	-88.23	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Wisconsin

Coordinates

Lat. (^o)

44.11

Long. (^o)

-88.23

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F018746	Metagenome / Metatranscriptome	233	Y
F020914	Metagenome / Metatranscriptome	221	N
F025291	Metagenome / Metatranscriptome	202	N
F026449	Metagenome / Metatranscriptome	198	Y
F029768	Metagenome / Metatranscriptome	187	N
F036251	Metagenome / Metatranscriptome	170	Y
F040648	Metagenome / Metatranscriptome	161	Y
F047698	Metagenome / Metatranscriptome	149	N
F049017	Metagenome / Metatranscriptome	147	N
F051235	Metagenome / Metatranscriptome	144	Y
F051952	Metatranscriptome	143	N
F070158	Metagenome / Metatranscriptome	123	N
F070165	Metagenome / Metatranscriptome	123	N
F070166	Metatranscriptome	123	N
F077342	Metagenome / Metatranscriptome	117	N
F078767	Metagenome / Metatranscriptome	116	N
F088950	Metagenome / Metatranscriptome	109	N
F101223	Metagenome / Metatranscriptome	102	N
F103196	Metagenome / Metatranscriptome	101	N
F103316	Metagenome / Metatranscriptome	101	N
F103498	Metagenome / Metatranscriptome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0307340_104492	All Organisms → cellular organisms → Archaea	1536	Open in IMG/M
Ga0307340_108283	Not Available	1140	Open in IMG/M
Ga0307340_109146	Not Available	1082	Open in IMG/M
Ga0307340_109541	Not Available	1057	Open in IMG/M
Ga0307340_112037	Not Available	926	Open in IMG/M
Ga0307340_112402	Not Available	912	Open in IMG/M
Ga0307340_112664	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus → unclassified Methanoculleus → Methanoculleus sp. MH98A	902	Open in IMG/M
Ga0307340_113990	Not Available	850	Open in IMG/M
Ga0307340_114285	Not Available	839	Open in IMG/M
Ga0307340_115118	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	813	Open in IMG/M
Ga0307340_116768	Not Available	765	Open in IMG/M
Ga0307340_117282	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	751	Open in IMG/M
Ga0307340_117401	Not Available	748	Open in IMG/M
Ga0307340_117518	Not Available	746	Open in IMG/M
Ga0307340_118110	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	732	Open in IMG/M
Ga0307340_118243	Not Available	729	Open in IMG/M
Ga0307340_118313	Not Available	727	Open in IMG/M
Ga0307340_122412	Not Available	644	Open in IMG/M
Ga0307340_125174	Not Available	600	Open in IMG/M
Ga0307340_128321	Not Available	559	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307340_103797	Ga0307340_1037971	F020914	MAIYQKYGFAIDQILSEDQALPNADSGDSTNTIKLDTVADDGLHIVVCAASTTVELASDATLEIRPTIGATDGAVTTVLPSILITQGVQSDVSWASGEMICQFNIPAKLIGSARYLKLTYVT
Ga0307340_104492	Ga0307340_1044923	F103498	MDSIESCELQHCRLRTDILCEVQRREEKQDERFYALIDELRLDWKETKKEVILIKDTMIQGFIALIVAVIGVYVSYLLLNVNGFV
Ga0307340_104855	Ga0307340_1048552	F103196	VKAGLRKDSFVLRIETAAGSDEGRRTAAGWLCFDGEPDALFYLFHVWFRHIKTNITVLDDAMADTVDLVEKAMGIAVREGGFGNEVLKDMIVRAVGRLASVSFTAGVYLHEDRFDSEVADGCSRHNGVHDELAHLAATGALDVQNQKHLKMLEAWMAARQA
Ga0307340_108283	Ga0307340_1082832	F051952	VYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGTEVFTFRSVFTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFRPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSR
Ga0307340_109107	Ga0307340_1091071	F029768	LKMLDSVLKEQAKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIEEKQREGYSLEQAKENYFLFQTVEYLEFLEQAKVMSNHSLRFMERATEKMNGILQETESKIEQAMKEIAQEQEK
Ga0307340_109146	Ga0307340_1091461	F070166	MNIDNYVVQIHKRTKRITLQRFLVSKIAYGKDFSLIELAALFHNQLWLQTKCSTDAQFRERYGNTLEALAKILKDCNFSRGLQPGTIKSVKAKLLAQEWDFLFPQRNMQNMEAQLRNSIFTTWRKSQGVEISKLPPKKHIGKGYRDHGTAPKPELDGSPSWQEVGSEFSNLEREDTENLLFLQKVVSGEIVYEPGTYKEIISRIKRTIQVKEAIKRIDPNWRNTQIAEASGGNIPKKVG
Ga0307340_109541	Ga0307340_1095412	F103316	AMHRIIGLIAAFAVAFFTLPTLTPSPDHISVETKTKTQVTTQELQKSPDQSSNETLNQADQMTDLKTLIADLDQQVKQANDLTEAINLIISGLLALLSYLIGNKLSAWLQKLFNKKRYKV
Ga0307340_112037	Ga0307340_1120372	F088950	MDIDGVLKEIAEFIEEKIPELDSKVTTIYPESERFAPPTVVIDIVAGRETLIVDGTKTHELVRIAIISDKKSEINRIFKLITDAFLDYGRELTLCAYGGVSYISPVAPAFVEKNSAMKRELDIVVIEFRKRG
Ga0307340_112402	Ga0307340_1124022	F101223	MTEVTQEDLETLKSELNEIIETRLDSFIDEFVATWNELENKESESEGCRSCESDNSDTENPARYLIFAGGNKFFATDIKPNAMVGIDFYLHEVDPATGKEYNSQGTITNADVVILDLQPEMDLETFSSIKRNTIDYAIKQAEEAHAKAKAVKAENSKIPINAN
Ga0307340_112664	Ga0307340_1126642	F018746	MRQSEALNAFEQAVIQAIERNPDHTIVIADLLREFSPRAPRSSCISRLEQMERRGLIEMSRFAGRILAHHPLE
Ga0307340_113990	Ga0307340_1139903	F078767	MTNQITDITDEILAALREAGCRTVGILPEVLMFSGNNNPFGFILLNSETTENDNGGVLTQLLDMSIFIITQNGINKMKEHCNVLYAAIGKILNSSGLNSKT
Ga0307340_114285	Ga0307340_1142851	F078767	DITDEILAALREAGCRTVGILPEVLIFSGNNNPFGFILLNSETTENDNGGMLTQLLDISIFIITQNGINKTKEHCNVLYAAIGKILNSSGLNSKTALVNLETINWHADMPFVTQLVGDLDIISSINFNIKYMNAR
Ga0307340_115118	Ga0307340_1151182	F077342	MARTLNEFVSSTGNYVYEITDAKMAGVDLTDFNVAVLLHCVLANEQERDFIVFSKGRIEQVFDISAQYFLLYSPTYCRNIGNGIFIVSLPFWRMQHIAESENSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTIDEPAREQRREILNPTRIF
Ga0307340_116768	Ga0307340_1167681	F036251	MSAKERQTVLFGDTGVTTPIDTTDRVRLSDGMVFVAHKIEVRPSNAYGEYVVFDGEDLDGKDFHAYSTSSVVLQQAKALLEKYGGEKGALTHDVLCAVKSVLSVNTGRRFLTMV
Ga0307340_116768	Ga0307340_1167682	F040648	NNEEALLEIEPMLDTAREGVTALETATTLIHIPTREMAKIQTAITKMREAAVYIENRARNLPVRSNATTKSALKDALKNASQEQIERAYAILSGQEAVEDVPAEGGEE
Ga0307340_117282	Ga0307340_1172821	F070158	TGLGKLDASSEKPSTEASSPSDAAPEANGNEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAERAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYIEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVMAVTRLKEEYRKKGLSIY
Ga0307340_117401	Ga0307340_1174011	F025291	NIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFQNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKSLTAQSCEWDLKGLGPNFNVWLDTGATIPGQFQIGNYIFGSIPINLGWEVKFQLVVEFTNPK
Ga0307340_117518	Ga0307340_1175181	F026449	IAFPYNSICKSMMIPRRLGGGNEAYYTYVGEADDDANKDSA
Ga0307340_118110	Ga0307340_1181101	F051235	QFLGFIAVTMRWPMLLLLSLGRFLKINCIFTVYPGSQRDVDGYFPKGLKWFLKPVASGKPFVAGVITTGNGLGRGLVLAVPNTVDQFRQDRELVGTIMKNLKLTRTLTGARTIAIAGQGPRFFRSHFPYEQPFVYGLKGRVFSVVETVERVTEKHGLRKEQTTVAILGVGEIGAAIISNLEEKGYRAVGIEIRIADGRVEIGREGMERLKGADLVVVQTPRGDDVVPYYGNLKDTAILIDDSH
Ga0307340_118243	Ga0307340_1182431	F049017	MAIAKYSKTCGKNVPGNSRLFFTEAANIGSITVTSNEISAITMNGTPTPVKFQEFGADIDSIKFTIEGTGSASYSEVQKLEAKFSKKTTALITAKNSLLDAVACGVAIIRVDNNGSAWLSGYTVKDKNRRAYNKITTNFDTGAKPSDEGTAAYTITLEAEGFDDELAFDTTLNAAIVGGTATFIDYN
Ga0307340_118313	Ga0307340_1183131	F025291	RRGGYKPSTKTKHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK
Ga0307340_122412	Ga0307340_1224121	F025291	IFRDRAWRVITYNYHLGDNSSTGLYTLNVGADQRYMTFQTLLTTDEFLNMAIVYNDFKIHKAVFTSLPTSNSNRLPYLYVDIEPTTSAGVNPNNVRTCADDSARIFAPKALAPQSCEWNLQGIGPNFNIWLDTGSTIPGQFQIGNYIFGSIPINLGWEVKFQLVCEFTNPK
Ga0307340_125174	Ga0307340_1251741	F070165	MVRMKRRGRNARRATQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVHVKVTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFQLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGA
Ga0307340_128321	Ga0307340_1283212	F047698	GVVQMQQATAIVGVLIGFLILTQIGIFVCDAMIGASSVNNSSQLYEAQETAIDTFVQCLSIVRILLIVAIVAVVFQYLQGAGLIPGFGGRQGGY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029833: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Pro1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences