3300029828: Human fecal microbial communities from Shanghai, China - P013V1

Overview

Basic Information

• IMG/M Taxon OID: 3300029828
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283508 | Ga0244885
• Sample Name: Human fecal microbial communities from Shanghai, China - P013V1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 188881099
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F029444	Metagenome	188	Y
F042095	Metagenome	159	N
F052660	Metagenome	142	N
F067845	Metagenome	125	N
F085718	Metagenome	111	N
F089591	Metagenome	109	N
F103436	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244885_101046	Not Available	25448
Ga0244885_101246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	21742
Ga0244885_105224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	5021
Ga0244885_119754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1382
Ga0244885_120420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1343
Ga0244885_124232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1143
Ga0244885_148177	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	592

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244885_101046	Ga0244885_10104621	F042095	MANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNIQTLELSSCYLDRYIKEFNDLPKLTSLKIHPGPYDMWNYFDINTLPFFEVDKINPNITDFYFLDGWVSGERRTGWNDDNMSGRGLEHLTGFIAAHSNSLRMDKLPDYIYEMRAITWFNVNGSTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWRIKPE
Ga0244885_101246	Ga0244885_10124621	F026489	MRSAGKVLLAEGGSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKGWATPEKTEDSRLFGVKIF
Ga0244885_105224	Ga0244885_1052249	F029444	MDVSGQLTGFELEDLMTWTVSNLQRPFREDFSLEKSGIIAEKESQIFGR
Ga0244885_105543	Ga0244885_1055434	F089591	MTMTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWKSLNEVSHIDDPESTSFGLPDDYLWFSNIKGSFSYNGCEVGDFVMWEAKNENVHELLGDDNNRPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELQRYRFDKDNVASFK
Ga0244885_119754	Ga0244885_1197542	F052660	MCILRVLPENTPEKIGQEQAGTEWTVDKSKIRLCIRNRSYGRFLHGGILMGIALPIPSHRAKSHDFACWWPAAAGHSRSADALPGKSNF
Ga0244885_120420	Ga0244885_1204203	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNAGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNAFLYWSGCYGVPDDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0244885_124232	Ga0244885_1242321	F103436	MIVASKKSWCDKSESEIFDNLREWVITCDLKYSKDDALDKIARASALWGGADYVTAVHLLDENEPYFKKSDWPYYSIGIEILKSRKHEFF
Ga0244885_148177	Ga0244885_1481771	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGDRPIVVMIENNNVDDYIILRYNETGRRNINGQSSLDLMLSVKEREPELWVVVISYIDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSNVSYYVGRLEEDGCFDELCEKIRVKRDRIYNMEIISLSDD