3300029823: Liquor fermentation pit mud microbial communities from Luzhou, China - Meta-4-2-220-M

Overview

Basic Information

• IMG/M Taxon OID: 3300029823
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121315 | Gp0152028 | Ga0134844
• Sample Name: Liquor fermentation pit mud microbial communities from Luzhou, China - Meta-4-2-220-M
• Sequencing Status: Permanent Draft
• Sequencing Center: Chongqing University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 165797189
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Desulfallaceae	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: China: Luzhou
• Coordinates
  • Lat. (^o): 28.88
  • Long. (^o): 105.45
  • Alt. (m): N/A
  • Depth (m): .01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021959	Metagenome / Metatranscriptome	216	Y
F028664	Metagenome	191	Y
F042860	Metagenome / Metatranscriptome	157	Y
F064746	Metagenome / Metatranscriptome	128	N
F088752	Metagenome / Metatranscriptome	109	N
F091648	Metagenome / Metatranscriptome	107	Y
F091989	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134844_100260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	59649
Ga0134844_102399	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	11070
Ga0134844_102448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	10881
Ga0134844_107442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	3642
Ga0134844_119121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Desulfallaceae	1289
Ga0134844_119756	Not Available	1240

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134844_100260	Ga0134844_10026033	F021959	LADQEVARLQEQIKTLFNDVTELKNDMKEIKDQLTNRLPNWATVLIAILTASVGWFAGR
Ga0134844_102399	Ga0134844_1023991	F064746	MKKIIWIALILLLGVFAIGSMSGTSGNDGAKNVTIDGYTFEGDFDDKWISGYGDTKTYKPANLEDQFGIPIGAYDWTGTENYNAFYYDSGEPSGSITKYGWAHIFVLKPDEDMADSSDILKHATRLLINPKDHRNAVVAGDLTEK
Ga0134844_102399	Ga0134844_10239913	F091989	MKLSAYARSIINVAKVNGYATDASKASDPLIRPFGEFDEQRASLRALQQTTIGLCWVNAEGKAVPFNETEFAGIQKEIAALQAKIDHNAAILEKLDAKVAELGIQEFSISKLKGQKERLRGQIAQIRSEESDALRSRWEAVVSLGGNRGTYDALPEVIEARAKAAVQIEPIEAEILALDRQIRDLESILSKFKR
Ga0134844_102448	Ga0134844_1024488	F091648	MTENETKPEPSPLETVERNLKTALDAWTEEINVSELPKAMQRKHRVASDKLGALVYDVHQYITTERRVGRPSGGLTKTTVRNEIKNATPEQLAAIAKILGQKPEPETDVSPVSTDVENLEEVNEE
Ga0134844_107442	Ga0134844_1074426	F028664	MKENSKILIGGQALRNLGSDRYTNDTDYLINDKSTRDAFITSDAVDYLNANGNKFFAEVWEQEQGNKQATPQSLFELKVYAFVQHCQNFNFAKADSCEYDLKFLVRNFNITESKIARKYITNGEYSEIVKIVRSVKF
Ga0134844_119121	Ga0134844_1191211	F042860	IKMAGFTREEILKRIEIEDTRIANADRNIEGLILQKNKSLDEQARLFALLETLPTEEPEAGI
Ga0134844_119756	Ga0134844_1197563	F088752	MKGLQSVYNQIINILKENNVLINITPPRPYLIKKDDEERINAEAEDLFKKCKIEEYNTKMKEKEAYKLYFDEAYKYTNFYEEGDE