3300029821: Groundwater microbial communities from Horonobe Underground Research Laboratory (URL), Japan - horonobe_ig3392

Overview

Basic Information

• IMG/M Taxon OID: 3300029821
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133313 | Gp0288067 | Ga0246092
• Sample Name: Groundwater microbial communities from Horonobe Underground Research Laboratory (URL), Japan - horonobe_ig3392
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Berkeley
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 268478502
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Candidatus Methanoperedenaceae → Candidatus Methanoperedens → Candidatus Methanoperedens nitroreducens	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Groundwater Microbial Communities From Horonobe Underground Research Laboratory (Url), Japan
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Horonobe Underground Research Laboratory (Url), Japan

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → planetary subsurface zone → groundwater
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Japan: Horonobe URL
• Coordinates
  • Lat. (^o): 45.045278
  • Long. (^o): 141.859444
  • Alt. (m): N/A
  • Depth (m): 215

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010068	Metagenome / Metatranscriptome	309	Y
F016758	Metagenome / Metatranscriptome	245	Y
F025315	Metagenome	202	Y
F069747	Metagenome	123	Y
F069913	Metagenome / Metatranscriptome	123	Y
F072481	Metagenome / Metatranscriptome	121	Y
F081380	Metagenome / Metatranscriptome	114	Y
F091055	Metagenome / Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0246092_1000129	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	198031
Ga0246092_1003129	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	11100
Ga0246092_1006144	All Organisms → cellular organisms → Bacteria	5621
Ga0246092_1006861	All Organisms → cellular organisms → Bacteria	5016
Ga0246092_1007397	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella	4649
Ga0246092_1010742	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Candidatus Methanoperedenaceae → Candidatus Methanoperedens → Candidatus Methanoperedens nitroreducens	3240
Ga0246092_1018411	Not Available	1899
Ga0246092_1019915	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1751
Ga0246092_1047086	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	695

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0246092_1000129	Ga0246092_100012965	F069913	LTGEEYNLLEEELINSGLDNKSFLTSRWIKLHKYYYWKRKSRDLKEDSLQAEGQFLPIDVHSGGLIKPSKRGKGLKQRFITRGEIEIELRTPSGAELRIRGIMDSLMVSTIIASTGGRRN
Ga0246092_1003129	Ga0246092_10031292	F091055	MIKVVFQYHVTKEKQAEYLQLTQDKIKPFWEANGCQSYTVWQVAESDTGFIKEMLFESGSALKETMALKQANPIKELYFKFATDISRKIVTKKI
Ga0246092_1006144	Ga0246092_10061443	F081380	MNRASEYLNIPDGKRLWLRDFQPHFNSLVLDPIKRFPLQMGDVLIGFVFMSCCIDYLAGFWWGENRGTGMVRQAYTGFINEYFRPRGLYNAKGLYDSLRNGLVHLFTIKDRIYELTFDEPERHLTVSHNGFIILNAGSFRNDLINAANLYFNELKKNPQLLDKAFQRYERDGFVRWID
Ga0246092_1006861	Ga0246092_10068619	F025315	MHNYLLYTCETLLVVVMPLLVLYLKGNWPLRKVILPLVVIPIFWYFTYAPLHELSHAAGIYLVGGKVIFWKLIPSFWLGEFARAWLTPSGITQSWQQLAMSSFPYLLDVVCFIVAIFAFRRGSSRNPFFIGLAFMLLCLRPACDFVFEPIAFLSGDRGDFYAIQQIIGPFAIWSFILISIGLAVYSISLSLIRLNRFSKQQIGQNTDDIKHNIVR
Ga0246092_1007397	Ga0246092_10073974	F010068	MKIKGTFYVTTKTAMTAAFGEERWNSFMAKLSEKDNYFKNVIMSITLIPVEKLIVIFDEMCKEFFNGDYSQYMMFGKVGAKVALSPEGPYKSYLLSKDLKQFVDFALPKLWATYFDGGVCTTKLENNIVHFKVTGVQFKHYYFEQLLMGYFQQSLKVFGKKSVAKQVRGISSGDEDIYFQYALKDS
Ga0246092_1010742	Ga0246092_10107426	F072481	AGVLMLLRLKSNLFGIMIPGSKQSEDMKSRKEGTIPPFHPNLKSEKHVSCKHCGETYKENEIKRDPKSGEWVCKHYPKCEGTGWHSI
Ga0246092_1018411	Ga0246092_10184112	F025315	MPLLVLYRKGNWPLRKIIPSLVVIPVIWYFSYSIVHELSHAAGTYLVGGKVIDYRLIPRFWLGEFRGAWATPGGLTQSWQQLTAHVFPYLMDIVCFVSAILIFRRGSSRNPFVIGIAFMLLCLRPAFNILGETIGLLTGWRGDLYNMQQIVGPFALWSFILFSIGLAIYSTSSTLSHLVRFSKQQIRQNADDTKHNIVQKGEKNDD
Ga0246092_1019915	Ga0246092_10199153	F016758	MNVKGIIYLTGKTTIIKVFGEEPWNVFIAKLGAKDKFFNNMIMSVTPVPLDKFIFFLDELVKEFFNNDMMQYVTFGKVAAQYALSPDGIYKSYLLTKDTKQFIESVMPKFWSTYFDEGTVVTKFENNVAHLKITGLKFKHNYFEHLIMGYFQKALKIFGKKTVAKRIRSMAAGDDDIYYQFEIKES
Ga0246092_1047086	Ga0246092_10470861	F069747	MNKQGRFLDSLTARQYGEVVLPDVSTGKSPGTLAGKLSRCKEGMARVFAVMVQILLRAGALALQV