NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029814

3300029814: Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-85_Run4



Overview

Basic Information
IMG/M Taxon OID3300029814 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133112 | Gp0282554 | Ga0243410
Sample NameHuman fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-85_Run4
Sequencing StatusPermanent Draft
Sequencing CenterZhejiang University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size141920095
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Hangzhou
CoordinatesLat. (o)30.0Long. (o)120.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062845Metagenome130N
F076189Metagenome118N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243410_100181All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii70040Open in IMG/M
Ga0243410_127619All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium777Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243410_100181Ga0243410_10018149F076189MPGRLCYLPGIAFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELPAHFDLHAIQSAQKQLRMLCNFHENTFWLLIFYANYAIL
Ga0243410_127619Ga0243410_1276193F062845MKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLL

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