x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our
privacy policy .
OK
Sample 3300029796
3300029796: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 064_3_9_stool_1
Overview
Basic Information
IMG/M Taxon OID 3300029796 Open in IMG/M GOLD Reference Gs0133117 | Gp0283036 | Ga0243875 Sample Name Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 064_3_9_stool_1 Sequencing Status Permanent Draft Sequencing Center Institute for Genome Sciences, University of Maryland School of Medicine Published? N Use Policy Open
Dataset Contents
Total Genome Size 275015227 Sequencing Scaffolds 6 Novel Protein Genes 6 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales 3 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes 2
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: Baltimore Coordinates Lat. (o ) 39.28846264 Long. (o ) -76.62594594 Alt. (m) N/A Depth (m) N/A Location on Map
Zoom: - Reset +
Powered by OpenStreetMap ©
Associated Families
Family Category Number of Sequences 3D Structure?
F032286 Metagenome / Metatranscriptome 180 Y F055715 Metagenome 138 N F067844 Metagenome 125 N F078693 Metagenome 116 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0243875_1000157 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii 92872 Open in IMG/M Ga0243875_1000248 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales 73100 Open in IMG/M Ga0243875_1004279 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales 9515 Open in IMG/M Ga0243875_1005196 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales 7962 Open in IMG/M Ga0243875_1043134 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes 959 Open in IMG/M Ga0243875_1058102 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes 732 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0243875_1000157 Ga0243875_100015796 F078693 MVRAPVRGAKRFYIKANCSLLMSKENQKTTSDFDALDPRERGCSPLSDP Ga0243875_1000248 Ga0243875_100024819 F032286 MVKWVCQTVTSVRHRALVFNTWLFAGNAADDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNHTEQKTISLFSLALIFIFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQNRKRAEI Ga0243875_1004279 Ga0243875_10042796 F067844 MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQDSPQVFGGP Ga0243875_1005196 Ga0243875_10051961 F055715 MNELLIERMAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAEILDN Ga0243875_1043134 Ga0243875_10431342 F032286 TADDALVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRTDNRTGQKTFSPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKGQKIEGRTPLCSQNSPFRNGLKTCA Ga0243875_1058102 Ga0243875_10581021 F067844 MNTLAAETASAWYLILNRKLQTLPIYKAQLSSPLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQV
