3300029791: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 053_3_11_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029791
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283010 | Ga0243849
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 053_3_11_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 262658420
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lachnoclostridium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Falcatimonas → unclassified Falcatimonas → Falcatimonas sp. MSJ-15	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F029444	Metagenome	188	Y
F029589	Metagenome / Metatranscriptome	188	Y
F047126	Metagenome	150	N
F050793	Metagenome	145	N
F051934	Metagenome	143	N
F067844	Metagenome	125	N
F067845	Metagenome	125	N
F074898	Metagenome	119	N
F078693	Metagenome	116	N
F082714	Metagenome	113	N
F090484	Metagenome	108	N
F090515	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243849_1000127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	140579
Ga0243849_1000263	Not Available	96311
Ga0243849_1001237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis	29504
Ga0243849_1001449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lachnoclostridium	25242
Ga0243849_1002200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	16984
Ga0243849_1002766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	13290
Ga0243849_1003458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	10446
Ga0243849_1009514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3711
Ga0243849_1010077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3504
Ga0243849_1012500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2838
Ga0243849_1017090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2099
Ga0243849_1051285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Falcatimonas → unclassified Falcatimonas → Falcatimonas sp. MSJ-15	743
Ga0243849_1051659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	738
Ga0243849_1068614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	549

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243849_1000127	Ga0243849_100012756	F029589	MKEYEIVAKLYNAXXXXAGSSRPQAFFEEAELNDPADYVRQKHGRDFKKFRKEVLANGQIVFSYDNGSVTYRYEFAEL
Ga0243849_1000263	Ga0243849_1000263109	F090484	MDIPKNPSDFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNKKDLLHKLGIGYSKFKNMTGHPMFDELFRMTNSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYMYVKAEQFKEKIENMDISVQSLPNINTTVDNDKELDGESVFKDIPLEELSFYNDTYLYPSSQYSSL
Ga0243849_1001237	Ga0243849_10012371	F067844	MNTLAAETASAWYLILNRKRPPKRAVASYFNMTQFSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSP
Ga0243849_1001449	Ga0243849_100144920	F090515	GVTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS
Ga0243849_1002200	Ga0243849_100220022	F029444	MDVSGQLTGFELEDLMTWTVSNLQRPFREDFSLEKSGIIAEKGSQIFGCRFVG
Ga0243849_1002766	Ga0243849_10027661	F051934	LKSLFRLLTVEGDVVASDGSFDARIDLGLTNAPEKTATRIRFFGLDSHWGIQSTTLGGETLMVNQLAWLEFAIKAYNHLDLPLQRVFLWLSPYAHTSAWAGVRQAIADLAAQETSGRLENTALITCAEEIARLSEDDRALYYYIEAFGLESGADANIFDALATLPEYVEANFPDGLSIEHTENGVSWQNGEETVFSHAEADGTQVVSLHLPDLVDFSATLRRDALLFTGALSLQSDVLNAQVSFSLPVSYPVTLPFYAQIDADGMMTGDDGIHLAFEGEAQGDTITIRRIQPDHSATMMTLTVKVIQVAEGTVKYAPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWLAALPAELVQGAMDAMEDSGLLGTLTDAVLNGEAGEY
Ga0243849_1003458	Ga0243849_10034583	F082714	MVVGXXXXPVRTVLQAVLPIFSTADVDFLVREYWVCTFGNGLPERRFTAQEMRRALDALTPDEHAELFTIYVLPHNAPGTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSGEQVEAAFEALTTAGLCEKVEEVEKETLAHWGF
Ga0243849_1009514	Ga0243849_10095141	F074898	CSLTLPSGQIDLAFSPDKGLCVQSGGQWAQLLVEGRPVDAALLTTPLKLLDGRSPSEVLGLLAEDVNKMLDAIPSLYNLPMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRMAASVLGKIYSMEYLDGLNFSDIYHNLLASVVQSSEVARAYRSAMRGYLLSNFRLSGQIGIDKGELLFSQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQTGSNFSLRLDNENANVFALNANVFSLESTSDYIRVKIYYNYYTLTITPATDGLDIVAQAGTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDGDFHLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTPESPVIPEAIGTIELTQLLDVLFYSTSHKSGHPFTAGV
Ga0243849_1010077	Ga0243849_10100771	F067845	MKHWKNLLVCLLVGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALNADNNMSHTDDLNAFLYWSGCYGVPEDVTVALLLDDSTAMTAQLYAPQADSAAAELLDDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0243849_1012500	Ga0243849_10125005	F078693	MVLAPVRGAERFFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEG
Ga0243849_1017090	Ga0243849_10170903	F090515	VITCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTA
Ga0243849_1051285	Ga0243849_10512851	F026592	LRTASPQGIAALAAQGGVATLTERSDETFSVVQFSSADRE
Ga0243849_1051659	Ga0243849_10516591	F047126	VHCFLLFPKVYLKTKKMTNISQTQAGFKSKSLGILCGSQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIARFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0243849_1068614	Ga0243849_10686141	F050793	EGEKTMRKCEVDVPENVEMADIHAIQTRIKKHNLLTTALLIPLFAGCALRESNETLGGIVFVLSIALMVLGFISGRDDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSDYRVQLGVLDEKTGAWENDEQDKVFPTLADVREYAAQEGYEPMDVDFGQMTDEEFQQFLDR