3300029783: Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-60_Run5

Overview

Basic Information

• IMG/M Taxon OID: 3300029783
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133112 | Gp0282373 | Ga0243236
• Sample Name: Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-60_Run5
• Sequencing Status: Permanent Draft
• Sequencing Center: Zhejiang University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 213799295
• Sequencing Scaffolds: 11
• Novel Protein Genes: 12
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Hangzhou
• Coordinates
  • Lat. (^o): 30.0
  • Long. (^o): 120.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F039198	Metagenome	164	Y
F047126	Metagenome	150	N
F047755	Metagenome	149	Y
F056682	Metagenome	137	Y
F068855	Metagenome	124	N
F071325	Metagenome	122	N
F076064	Metagenome	118	N
F078004	Metagenome	117	N
F084124	Metagenome	112	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243236_1000229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	85830
Ga0243236_1000356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	64121
Ga0243236_1001544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	19186
Ga0243236_1004628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6122
Ga0243236_1005323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5257
Ga0243236_1008521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3169
Ga0243236_1011468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2341
Ga0243236_1017771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1528
Ga0243236_1018260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1490
Ga0243236_1028893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	980
Ga0243236_1030565	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	932

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243236_1000229	Ga0243236_100022987	F039198	MQITNTEIQGTKYVQIYLTEEELQKKETKDLVKKYKQEKYSVAIFVSGKENYPEILEKIITKQVELNRNVC
Ga0243236_1000356	Ga0243236_10003567	F084124	LLFGGLNKKAKAFARATKENTLHFHSQRNALTMFLAFLFIMAVACFNKLSLNTQTAWLFAPDKLLYRKILWALPKPAIFEKIE
Ga0243236_1001544	Ga0243236_10015447	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPLPFAQRFIACFCSQTAAASQSKSAYILSFLELPCILCSLLRCFHILSKKLQKTC
Ga0243236_1004628	Ga0243236_10046286	F032286	MVKWVCQIVIPVRRRALVFDVLFFAGNAADDTLVTGGTLSFCRLMRLCVKRRNIILNGKRRSLPDSALFHADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSRRFVPVGTLALSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIDLSRISKRSENAPKNADFHAYGQDRKRTEN
Ga0243236_1005323	Ga0243236_10053231	F068855	CPSSSVPTVEVQGPQARRNLVPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW
Ga0243236_1008521	Ga0243236_10085213	F047755	MEQKKVKYLIDMINNMDIKDKLRLAICMSQSKWSGLIYNTKKYYEKFDSMLKDIDEEYRTTLINFGKYKLVMFAMAKLMEMETTEQNKVALYLFNSXXXXNFXQFYVNMV
Ga0243236_1011468	Ga0243236_10114681	F032286	MVKWICQIVTPIRHRALVFDARLSAGNTANDTLVTGNTRSFCRLVCLCVKRQNVKSDSKRRSLPDSALFHADNRTAQKTISPFSLALILTFDFAALSERRSCPEVRSRRFVLLGALDAALRQRTYPIRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNANFHAYGQDRKRAE
Ga0243236_1012473	Ga0243236_10124732	F078004	MIRHTLIITVINALYCLTVDADRMAWMRQGIAERFSSLSLLRKALTAGVVTVTGVLAAHHDVSLAAQTVLIIGTIFHNAF
Ga0243236_1017771	Ga0243236_10177711	F056682	VKMQSRAGKVANQPIGQGEMYSASFGTFPLKNRTTFPIQEPRKIHEKQEVL
Ga0243236_1018260	Ga0243236_10182602	F071325	GIVFRDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0243236_1028893	Ga0243236_10288933	F056682	IRQGEIYSASFGAFPSKNRSTFPIQKLGKIYENQEVL
Ga0243236_1030565	Ga0243236_10305652	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTLEAEKLMLTEDYFSARRQIRLC