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Sample 3300029778
3300029778: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 074_4_28_stool_1
Overview
Basic Information
IMG/M Taxon OID 3300029778 Open in IMG/M GOLD Reference Gs0133117 | Gp0283048 | Ga0243887 Sample Name Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 074_4_28_stool_1 Sequencing Status Permanent Draft Sequencing Center Institute for Genome Sciences, University of Maryland School of Medicine Published? N Use Policy Open
Dataset Contents
Total Genome Size 205058795 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii 2 All Organisms → cellular organisms → Bacteria 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: Baltimore Coordinates Lat. (o ) 39.28846264 Long. (o ) -76.62594594 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F026592 Metagenome / Metatranscriptome 197 Y F076189 Metagenome 118 N F099269 Metagenome 103 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0243887_1006228 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens 4370 Open in IMG/M Ga0243887_1010176 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii 2798 Open in IMG/M Ga0243887_1019523 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii 1603 Open in IMG/M Ga0243887_1028457 All Organisms → cellular organisms → Bacteria 1167 Open in IMG/M
