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Sample 3300029773
3300029773: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 062_3_13_stool_1
Overview
Basic Information
IMG/M Taxon OID 3300029773 Open in IMG/M GOLD Reference Gs0133117 | Gp0283017 | Ga0243856 Sample Name Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 062_3_13_stool_1 Sequencing Status Permanent Draft Sequencing Center Institute for Genome Sciences, University of Maryland School of Medicine Published? N Use Policy Open
Dataset Contents
Total Genome Size 190906979 Sequencing Scaffolds 2 Novel Protein Genes 4 Associated Families 2
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: Baltimore Coordinates Lat. (o ) 39.28846264 Long. (o ) -76.62594594 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F059106 Metagenome 134 N F101356 Metagenome 102 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0243856_1000419 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia 57184 Open in IMG/M Ga0243856_1002685 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → [Ruminococcus] torques 9328 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0243856_1000419 Ga0243856_100041955 F059106 MHVIAWKIRAILLQIFAWIVDLKVRERLTEYLKKDIKYHRVIIGVLV Ga0243856_1002685 Ga0243856_10026851 F059106 IRVILLQKFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV Ga0243856_1002760 Ga0243856_10027601 F101356 LDGKLQTDVGELIPVVTPEKDGLSNSKFATTKIKSEGKRSILLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYMYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ Ga0243856_1010335 Ga0243856_10103351 F101356 VSVLPRRFTDVGELMPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYESDHRISIYLTSPNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
