3300029765: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 050_3_10_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029765
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283003 | Ga0243842
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 050_3_10_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 186132733
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059106	Metagenome	134	N
F071325	Metagenome	122	N
F089005	Metagenome	109	N
F097493	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243842_100075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis	190162
Ga0243842_100798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	38006
Ga0243842_102051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	13125
Ga0243842_104140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	5719

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243842_100075	Ga0243842_100075231	F059106	ILLQIFVWIVDLKVRERLTEYLKKDIKYHQVIIEVLV
Ga0243842_100798	Ga0243842_1007981	F071325	LLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLVFEELLSCAAAYL
Ga0243842_102051	Ga0243842_10205115	F089005	LTKSKQRSIIVLALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHQEL
Ga0243842_104140	Ga0243842_1041401	F097493	HMKNGTAYFYEHGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMDTEIAKIQHTDITFEQPTSEQLSQIQSKTFDSMSDMKQYVQSVMNGELTQDEINAMLLLKIAEMEVAITNEQTTN