3300029762: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37193R1

Overview

Basic Information

• IMG/M Taxon OID: 3300029762
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283819 | Ga0245183
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37193R1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 128884730
• Sequencing Scaffolds: 4
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F032312	Metagenome / Metatranscriptome	180	N
F036964	Metagenome / Metatranscriptome	169	Y
F042936	Metagenome	157	N
F044555	Metagenome / Metatranscriptome	154	N
F064817	Metagenome	128	N
F101357	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245183_100250	Not Available	85233
Ga0245183_103167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5002
Ga0245183_103797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4029
Ga0245183_109744	All Organisms → cellular organisms → Bacteria	1525

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245183_100250	Ga0245183_10025058	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWLKLLGVALMMLLWPIVFIYALNDGIERYPFKKYAIPYIFILVVWFIIFLYGLVS
Ga0245183_100250	Ga0245183_10025063	F044555	MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLEKPIGIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0245183_100250	Ga0245183_10025066	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLDANQYKLYPLLLGILKISLKDAYHNYSNTSNIHYEGGKFPSMLTIQLFNLEF
Ga0245183_100250	Ga0245183_10025071	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRDYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0245183_103167	Ga0245183_1031674	F036964	LDILKILFPALMIVGALGSLIVNLLDKGEHAISIQWLGATLLYTALMMRNIK
Ga0245183_103797	Ga0245183_1037974	F042936	VYDLWDGEGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG
Ga0245183_109744	Ga0245183_1097441	F026592	RTASPQGIDAQASQGSVAPLTERSDETFSVKQFFSADRE