3300029748: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37308R1

Overview

Basic Information

• IMG/M Taxon OID: 3300029748
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283841 | Ga0245205
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37308R1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 223785323
• Sequencing Scaffolds: 18
• Novel Protein Genes: 23
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F039147	Metagenome	164	N
F043413	Metagenome	156	N
F043945	Metagenome	155	N
F044555	Metagenome / Metatranscriptome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F050793	Metagenome	145	N
F051934	Metagenome	143	N
F055739	Metagenome	138	N
F056623	Metagenome	137	N
F059982	Metagenome	133	N
F064817	Metagenome	128	N
F067845	Metagenome	125	N
F068811	Metagenome	124	N
F075480	Metagenome	119	N
F078003	Metagenome	117	N
F080163	Metagenome	115	N
F087336	Metagenome	110	N
F088921	Metagenome	109	N
F090513	Metagenome	108	N
F099451	Metagenome	103	N
F101355	Metagenome	102	N
F101357	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245205_1000009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	383029
Ga0245205_1000022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	299050
Ga0245205_1000096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	146902
Ga0245205_1000163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	113015
Ga0245205_1000171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	109664
Ga0245205_1000179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	106683
Ga0245205_1000214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	96751
Ga0245205_1000267	Not Available	85228
Ga0245205_1000389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	64388
Ga0245205_1000392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	64007
Ga0245205_1000611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	43994
Ga0245205_1001250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	22220
Ga0245205_1001361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	20561
Ga0245205_1002379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	11780
Ga0245205_1002700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	10387
Ga0245205_1002701	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	10375
Ga0245205_1008590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	3524
Ga0245205_1016782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1969

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245205_1000009	Ga0245205_1000009350	F050793	MRKQVLVPENVEMADIHAIQTRVKKHNLLTVVLLIPLFAGCALRESHETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGMWLCAEARVAVYREGSGYRVQLGVLDEKTGAWENDEQDEVFPTLADVHEYATQEGYEPMAVDFETMTDEEFQQFLDRSRI
Ga0245205_1000022	Ga0245205_100002243	F043945	MKHNLRAAFLSLLLVLTLGVMPVFAESADHAMDWTHGIGSRYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLNGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVTELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAQYGLYVIAKDKTDEYQIVRFDVDTGKGEMMEFALEDEEDSHLMPDMPGFFRWSAESSKYERTLYDGKVLTMVNLPNGEATSVVHNLVNTLTLQPIQDYDVTLGDYVTHDAYYAYAPNKDNTAMYFVHDNTVWVMEYDEENSQFSEPRGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARAYLYGEVE
Ga0245205_1000096	Ga0245205_100009699	F075480	MNKTKQEKWQRAYGDTPDSFRQRVASSLPKGEESRHVAFPRRAMVLAAALVLVLTTAYAAVVTHTELVWNAGHPIENEADDRLGLLTGKAGTSGDSLTIGGVTFTVQDGIYSPETGQLFESAVISADESVQLVGVESDMEWEVRAVTPVSEKLDPSGISWAEWAEQNGKTLVPVRMEIRGSEQFPNIPMFGDFLTQNPDGTVSVGFQVDLSEEDVSHLKSCEVQLECRVGVFGKDGKATQWQKEILTATITFK
Ga0245205_1000163	Ga0245205_10001638	F056623	MKSTEEMLQAAVQQLQTAEQARLTSETDPARRQLLHLLYAREAAALQSMTLVRAEIPATQKRNWKPLIFPFAAAVLNLGALALWLTLPNCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVVVADEPELRRRLVEVEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYTPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG
Ga0245205_1000171	Ga0245205_100017183	F059982	MRRMTRLLCLMLLFSLITFSCPLAEETDAPTGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMTEGRITLVRGDSRVVAMVISRVPDADPAAALPVLMQDFDPKTSETMDFDAQPGFCILGGVVNDAFGDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENVSMDGAAVYVAEDAAATASPEA
Ga0245205_1000179	Ga0245205_100017912	F078003	VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKHMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDALGAEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREEYEPNVTALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPYTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTESLNQLEELVRRCEKMIREGQKGNAGNEQEKYQDNKNLTTAACKVQKKYR
Ga0245205_1000214	Ga0245205_100021477	F055739	MTEQQLREKLQFAYGNMPDATRAAFEHSLTHHRAPETHRNIGLSRTMRIVITAVLMALMLTAVGVAAARFFSVTDVHPAQDGTEGDYQAHYLALEERYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDETGQMPPEGKPIAWTIEIDVLKAVWQTETIPDDLYEALSEEDNVAQYIREQAEQHMITLTDAGVEDYLLEMCGAGWDEIEQMSKADLLLRCGGFERAETYTVAFATEGNTQYVHPELAGLRIPLDGYTAVVDYVRASFLGGCVVLHCEAPEGTALPNGTALPDVWRIYRNDEQNPAGEAGWARASGYAGVPGGVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE
Ga0245205_1000214	Ga0245205_100021479	F043413	MTEREVREKLQSAYGTMPDATRAAFEHSLTHHRVETRNPVRMSRRMRTIVTLALMLMMLTAVGVAAAKLASVTDYPPPSGLTPEYMSHLVTLNEAYDGDLLTLSVNDLVFDGTTVEVAMNVQPKAGKQVFMDMEVTAECAGRAYTLEIEGCGGGDFMSGMFLPDGTGSWSDSPFGFDGVLWDDDMQSPPEGAPIAWTMTFELLQPVWEVEYLPDAQYQALLAGGADTLEAYVQNNWRKHIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIDMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEMRQMTNLPNAWRVYVNGQTEAGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGERWDACHPDAEKGFTLELQE
Ga0245205_1000267	Ga0245205_100026724	F032312	MAYSLKRKTMARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0245205_1000267	Ga0245205_100026726	F080163	MKTIKFLQESFETKERFQQEISFKYSYNQDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKILFVIITYMKTYFDFCKNYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLKSEILDSEIELLQEKLDLIREEICELIGIDPNLEKQGHEDNYIFNLNIDSDNQIGFFLQATEL
Ga0245205_1000267	Ga0245205_100026730	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKSTISRFQAQYNIQEINPYLQDILQNPEDLVPLSQHHKR
Ga0245205_1000267	Ga0245205_100026737	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIYNPDSLDKPFIQLSTTFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF
Ga0245205_1000267	Ga0245205_100026742	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVIFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKDLVPAHDISDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGSRICIQNIIERNINQENQDENETI
Ga0245205_1000389	Ga0245205_10003892	F051934	MGLMRRLAAAALAAVLVLSTALGERVTFRLSADIDPVQYPAQERKLAQGLKSLFRLLTVEGDVVVSDGSFDARIDLGLTNAPEKTATRIRFFGLDSHWGIQATDLGGETLMVNQLAWLEFAIKAYNHLDLPLQRVFLWLSPYAHTSAWAGLRQEIADLAAQETSGRLENTALITCAEEIARLSEDDRALYYYIEAFGLESGTDANIFDALATLPEYVEANFPDGLSIEHTENGVSWQNGEKTVFSYADADGTQVVSLHLPDLVDFSATLRRDALLFTGALSLQSDVLNADVSFSLPASYPVTLPFYAQIDADGMMTGDDGIHLAFEGEAQGDTVIIRRIQPDHSATMMTLTVKVIQVAEGTVKYAPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWLAALPAELVQGAMDAMEDSGLLGTLTDAILNGEAGEY
Ga0245205_1000392	Ga0245205_100039237	F039147	MRARRLLILLMMLLLLPQAQAERLTLYTRPGQVDEAAPFQLRPTELSICSVTRAMGGVVVLANDDNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYAMSRVPNYRMPDLTHAISNLTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMANLSCLNISYRDLETDKVYTYPASLTRMHVCGSVLAISVMQENGIKVVLVDLADGAIREIADESLEAMYEWADGELLLWRLEGSPNEISRSSGTYTLSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEDPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPEVILAQETLTKSAMNAASLAARMSASADAPDILRLGLTPDTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGIYRDAVTRNGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVRDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTMNADLVGKMLAQVIADQEATAKCVLLADYDEPIEDSYYLIMVNDYEKTLTELRRQQENAPVWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFSALVSQVHQGEISLEEFVEKADKLIEGLEQ
Ga0245205_1000611	Ga0245205_100061132	F087336	MVAELEQVPKAFRAAGRQRIAAAKERIKDDAIGHGRVSDRILAEIEDHHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAPQEVNSQSALSESNQLINP
Ga0245205_1001250	Ga0245205_100125018	F068811	MDQDGSEHNICSNREGLRPGKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI
Ga0245205_1001361	Ga0245205_100136117	F088921	LGATIRLYKIGAGEKHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANK
Ga0245205_1002379	Ga0245205_10023791	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNAFLYWSGCYGVPEDVTVALLLDDSTAMTAQLYAPQADSAAAELLKDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0245205_1002700	Ga0245205_10027004	F090513	MAKYVRKIEWKLLHIKHILYMQPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTYGNTA
Ga0245205_1002701	Ga0245205_100270112	F099451	MEIKNVGKLRKIIENLPDDFEIEMRIRRKLTDEELKNCRYPYPYDTEYLILEFDDLGVSSKVLCLGVTYNE
Ga0245205_1008590	Ga0245205_10085904	F101355	MAFWFIQWYLPSAQPPQPKGAGAVFPYVLPRCSYFFKMFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWIPDHFYKKLLPYVLFPFFKIYLKKIDFFQNIA
Ga0245205_1016782	Ga0245205_10167822	F047125	MVLGVMLSGFWAADALDHMRKEILQQEGKRRGWWS