Sample 3300029747

Overview

Basic Information
IMG/M Taxon OID	3300029747 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133139 \| Gp0283864 \| Ga0245228
Sample Name	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35838
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	226180538
Sequencing Scaffolds	15
Novel Protein Genes	15
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	United Kingdom: London
Coordinates	Lat. (^o)	51.5	Long. (^o)	-0.12	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F032286	Metagenome / Metatranscriptome	180	Y
F039198	Metagenome	164	Y
F042910	Metagenome	157	N
F047125	Metagenome / Metatranscriptome	150	N
F052660	Metagenome	142	N
F055715	Metagenome	138	N
F059982	Metagenome	133	N
F067845	Metagenome	125	N
F068855	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F087334	Metagenome	110	N
F088920	Metagenome	109	Y
F097493	Metagenome	104	Y

Family

Category

Number of Sequences

3D Structure?

F013656

Metagenome

269

F032286

Metagenome / Metatranscriptome

180

F039198

Metagenome

164

F042910

Metagenome

157

F047125

Metagenome / Metatranscriptome

150

F052660

Metagenome

142

F055715

Metagenome

138

F059982

Metagenome

133

F067845

Metagenome

125

F068855

Metagenome

124

F074899

Metagenome / Metatranscriptome

119

F087334

Metagenome

110

F088920

Metagenome

109

F097493

Metagenome

104

Scaffold	Taxonomy	Length	IMG/M Link
Ga0245228_100162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	144150	Open in IMG/M
Ga0245228_100190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	135102	Open in IMG/M
Ga0245228_100376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	90006	Open in IMG/M
Ga0245228_103144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7255	Open in IMG/M
Ga0245228_106032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3952	Open in IMG/M
Ga0245228_107722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3205	Open in IMG/M
Ga0245228_108378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2990	Open in IMG/M
Ga0245228_115011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1854	Open in IMG/M
Ga0245228_116135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1746	Open in IMG/M
Ga0245228_130633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1011	Open in IMG/M
Ga0245228_134196	Not Available	915	Open in IMG/M
Ga0245228_134871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	899	Open in IMG/M
Ga0245228_137249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	846	Open in IMG/M
Ga0245228_163851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	514	Open in IMG/M
Ga0245228_164658	Not Available	508	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0245228_100162

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

144150

Open in IMG/M

Ga0245228_100190

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

135102

Open in IMG/M

Ga0245228_100376

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

90006

Open in IMG/M

Ga0245228_103144

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

7255

Open in IMG/M

Ga0245228_106032

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

3952

Open in IMG/M

Ga0245228_107722

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

3205

Open in IMG/M

Ga0245228_108378

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

2990

Open in IMG/M

Ga0245228_115011

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

1854

Open in IMG/M

Ga0245228_116135

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

1746

Open in IMG/M

Ga0245228_130633

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

1011

Open in IMG/M

Ga0245228_134196

Not Available

915

Open in IMG/M

Ga0245228_134871

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

899

Open in IMG/M

Ga0245228_137249

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

846

Open in IMG/M

Ga0245228_163851

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

514

Open in IMG/M

Ga0245228_164658

Not Available

508

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0245228_100162	Ga0245228_100162117	F013656	MNKKIYKEPLKSETETTINVLYGENLLSLYTNKVGLQKQLNKILGEPTKEYKIKRSIAGSLWEMSLNDKAKIQKLILKANIYEL
Ga0245228_100190	Ga0245228_10019016	F039198	MKLTIAEIQGTKYVQIYLTEDELQKKETKDLAQKYKQEKYSVAIFVTGKENYPEILEKIITKQVGLNRNVC
Ga0245228_100376	Ga0245228_1003762	F055715	LTKANEFDRINELLIERTAENKTFSGSSKELQKNKLKKFLTNEKLCDKISELIRVGTAEILDN
Ga0245228_103144	Ga0245228_1031441	F074899	KQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVTSSNLVSSSK
Ga0245228_106032	Ga0245228_1060329	F074899	MSGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTAVGKDEVGSSNLPSSSNINRLNHLI
Ga0245228_107722	Ga0245228_1077224	F068855	VPIISKCPSSSVPTVEAQGPQARKTLALQGLQVEKENENANVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGWAVW
Ga0245228_108378	Ga0245228_1083781	F032286	TPVRHRALVFNTRLFAGNAADDTLVTGGTFRFCRLVCLCVKRRNIILNGKRRSLLNSTLFRADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQNRKRAEI
Ga0245228_115011	Ga0245228_1150112	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLNLVYTVALDADGNMGYTDNLNAFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLDDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0245228_116135	Ga0245228_1161353	F052660	MCILRVLPEKTSERIGQERAGTEWTVVKSKIRLCIRNRSYGRFLHGGILMGIALSIPAHRAKSHDFACWWPAAADHSRSASALPGKSNS
Ga0245228_130633	Ga0245228_1306331	F087334	MASRYPFVGVAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLCRAAALFEYREKHQ
Ga0245228_134196	Ga0245228_1341962	F088920	VSANLHHYPAFWAGLILHLILHFFPKAALFAPKQAILLIFVPTLFFACLTAFSLHTSPKVSGQTSLYQPWLSPYYLFKD
Ga0245228_134871	Ga0245228_1348711	F042910	RRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDTAITALTISAAGKISFQGLTIAPGAAIRIHHDAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEASAAAFVSGRCKGRYC
Ga0245228_137249	Ga0245228_1372492	F059982	ETDAPTGTPAPTPMLTAVPESALAPFNVILPDDTHVEMAEGRITLVQGDSRVVAMVIFRVPDEDPAAALPVLMQDFDPKTSETMDFDAQPGFCILGGVVNDAFGDGEDKITLMVLADSGELLILSGYNLSRDHHALYLFLTELLENVSMDGAAVYVKEEATETASPEV
Ga0245228_163851	Ga0245228_1638511	F097493	MYKFYMKNGTAYFYERGVEIDGTVYGIRTDSDILRIKRSVVNSKFAETDDNFDMDTEIAKIQHTDVTLEQPTSEQLSQIQSKTFDSMSDMKQYVQSVMNGELTQDEINAMLMLQIAELKAGVGGE
Ga0245228_164658	Ga0245228_1646582	F047125	MDVVLLLMVLGVMLSGFWAADAMDHMRKEIIRQEGKRR

Scaffold ID

Protein ID

Family

Sequence

Ga0245228_100162

Ga0245228_100162117

F013656

MNKKIYKEPLKSETETTINVLYGENLLSLYTNKVGLQKQLNKILGEPTKEYKIKRSIAGSLWEMSLNDKAKIQKLILKANIYEL

Ga0245228_100190

Ga0245228_10019016

F039198

MKLTIAEIQGTKYVQIYLTEDELQKKETKDLAQKYKQEKYSVAIFVTGKENYPEILEKIITKQVGLNRNVC

Ga0245228_100376

Ga0245228_1003762

F055715

LTKANEFDRINELLIERTAENKTFSGSSKELQKNKLKKFLTNEKLCDKISELIRVGTAEILDN

Ga0245228_103144

Ga0245228_1031441

F074899

KQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVTSSNLVSSSK

Ga0245228_106032

Ga0245228_1060329

F074899

MSGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTAVGKDEVGSSNLPSSSNINRLNHLI

Ga0245228_107722

Ga0245228_1077224

F068855

VPIISKCPSSSVPTVEAQGPQARKTLALQGLQVEKENENANVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGWAVW

Ga0245228_108378

Ga0245228_1083781

F032286

TPVRHRALVFNTRLFAGNAADDTLVTGGTFRFCRLVCLCVKRRNIILNGKRRSLLNSTLFRADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQNRKRAEI

Ga0245228_115011

Ga0245228_1150112

F067845

MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLNLVYTVALDADGNMGYTDNLNAFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLDDAAGHSELGAAFIDYNGTAYVVAVFR

Ga0245228_116135

Ga0245228_1161353

F052660

MCILRVLPEKTSERIGQERAGTEWTVVKSKIRLCIRNRSYGRFLHGGILMGIALSIPAHRAKSHDFACWWPAAADHSRSASALPGKSNS

Ga0245228_130633

Ga0245228_1306331

F087334

MASRYPFVGVAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLCRAAALFEYREKHQ

Ga0245228_134196

Ga0245228_1341962

F088920

VSANLHHYPAFWAGLILHLILHFFPKAALFAPKQAILLIFVPTLFFACLTAFSLHTSPKVSGQTSLYQPWLSPYYLFKD

Ga0245228_134871

Ga0245228_1348711

F042910

RRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDTAITALTISAAGKISFQGLTIAPGAAIRIHHDAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEASAAAFVSGRCKGRYC

Ga0245228_137249

Ga0245228_1372492

F059982

ETDAPTGTPAPTPMLTAVPESALAPFNVILPDDTHVEMAEGRITLVQGDSRVVAMVIFRVPDEDPAAALPVLMQDFDPKTSETMDFDAQPGFCILGGVVNDAFGDGEDKITLMVLADSGELLILSGYNLSRDHHALYLFLTELLENVSMDGAAVYVKEEATETASPEV

Ga0245228_163851

Ga0245228_1638511

F097493

MYKFYMKNGTAYFYERGVEIDGTVYGIRTDSDILRIKRSVVNSKFAETDDNFDMDTEIAKIQHTDVTLEQPTSEQLSQIQSKTFDSMSDMKQYVQSVMNGELTQDEINAMLMLQIAELKAGVGGE

Ga0245228_164658

Ga0245228_1646582

F047125

MDVVLLLMVLGVMLSGFWAADAMDHMRKEIIRQEGKRR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029747: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35838

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences