3300029744: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36674

Overview

Basic Information

• IMG/M Taxon OID: 3300029744
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283797 | Ga0245161
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36674
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 201613473
• Sequencing Scaffolds: 18
• Novel Protein Genes: 21
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	13
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F032312	Metagenome / Metatranscriptome	180	N
F039147	Metagenome	164	N
F039198	Metagenome	164	Y
F042910	Metagenome	157	N
F047755	Metagenome	149	Y
F050793	Metagenome	145	N
F055739	Metagenome	138	N
F058154	Metagenome	135	N
F060985	Metagenome / Metatranscriptome	132	N
F067845	Metagenome	125	N
F074898	Metagenome	119	N
F075480	Metagenome	119	N
F076189	Metagenome	118	N
F078003	Metagenome	117	N
F078822	Metagenome	116	N
F080163	Metagenome	115	N
F088914	Metagenome	109	N
F101191	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245161_100196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	93356
Ga0245161_100269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	76583
Ga0245161_100375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	61750
Ga0245161_100378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	61532
Ga0245161_100425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	56929
Ga0245161_100662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	39498
Ga0245161_101617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	17597
Ga0245161_102166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12741
Ga0245161_102175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12693
Ga0245161_102297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11973
Ga0245161_102762	All Organisms → cellular organisms → Bacteria	9755
Ga0245161_104755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5399
Ga0245161_107209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3555
Ga0245161_110610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2486
Ga0245161_114615	Not Available	1879
Ga0245161_131912	Not Available	951
Ga0245161_142219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	732
Ga0245161_152089	Not Available	607

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245161_100196	Ga0245161_10019615	F074898	MRKILSLLLILALFLPCALAETPQGIDLALTSTYGDVLSLRMTAGLGETPFCSLTLPSGQIDLAFSPDKGLCVQSGGQWAQLLVEGRPVDAALLTTPLKLLDGRSPSEALGLLAEDVNKMLDAIPSLYNLPMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRLAASVLGKIYSMEYLDGLNFSDIYHNLLASVVQSSEVARAYRSAMRGYLLSHFRLSGQIGIDKGELLFSQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQAGSNFSLRLNNENANVFALNANVFSLESTSDYIRVKIYYNYYTLTITPATDGLDIVAQARTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDGDFQLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTPESPVIPDTLGTIELTQLLDGLF
Ga0245161_100269	Ga0245161_10026968	F055739	MTEQQLREKLQFAYGNMPDATRAAFEHSLTHHRAPETHRSIGLSRTIRIVITAVLMALMLTAVGVAAARFFSVTDVHPAQDGTEGDYQAHYLALEERYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDENGQMPPEGKTIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAQYIREQAEQRVITLTDAGVEDYLLEMCGAGWDEIEQMSKADLLLRCGGFERAETYTVAFATEGNTQYVHPELAGLRIPLDGYAAVVDYVRASFLGGCVVLHCEAPNGTALPDVWRIYRNDEQNPAGEAGWVRASGYAGVPVGVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE
Ga0245161_100375	Ga0245161_10037511	F058154	MKNRTFQRLFPLLRMGSILLAAVLFCAALIGVNAQLTVGTNEERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDASRHDVTLYMLCPLLYGGTLAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMTCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTYQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVAMLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAARIES
Ga0245161_100378	Ga0245161_10037873	F013656	MGKIYKEANKCEIETTINVLYSEKILSIYTNKVDLERRLYRVLGEPKKEYIKGRSVLASLWEIPLDDISKINKVILRADIYGI
Ga0245161_100425	Ga0245161_10042518	F050793	MRETGAIAPNDAEREKTMRKYEVDVPENVEMADIQAIQKRVKKHNLLTVALLIPLFAGYALRESSETLGGIVFVLSIALMVLGFISGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGAWENDEQDEVFPTLIDVREYASQEGYEPMDVDFEQMTDEEFQQFLDRSRI
Ga0245161_100662	Ga0245161_10066211	F039147	MRARRLLILLMMLLLLPQAQAERLTLYTRPGQVDEATPFQLRPTELSICSVTRAMGGVVVLANDDNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYSMSRVPNYRMPDLTHAISNLTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMANLSCLNVSYRDLETDKVYTYPASLTRMYVCGSVLAISVMQENSIKVVLVDLTDGAIREIADESLEAMYEWADGELLLWRLEGSPNEISRSSGTYTLSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEEPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPEVILAQETLAKSAMNAASLAARMSASADAPDILRLGLTPDTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGIYRDAVTRNGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVRDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTTNADLVGKLLAQVIADQEATAKCVLLADYDEPIEDSYYLIRVNDYEKTLTELRRQQENAPAWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFSALVSQVHQGEISLEEFVEEADKLIEGLEQ
Ga0245161_101617	Ga0245161_1016176	F078003	VNEHLAFAQCLQRVLSETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKHMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDALGAEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREAYEPNVTALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFLRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPCTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTESLNQLEELVRRCEKMIREGQKGNAGNEQEKISGQ
Ga0245161_102166	Ga0245161_10216610	F042910	LADRLYCALNGTTLHDLDARIHLLDVEELAPAVRTVTASRIGGGLHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDTAITTLTISAAGKISFQGLTIAPGAAIRIHHDAGVFAAEMVSNDSTVSILPYRTPDSADDLLLRPGVLNEIRVEAGSAAFVSGRCKGRYC
Ga0245161_102166	Ga0245161_1021668	F101191	LLISHHPASAEYLQLGEGMLLCGFDLDKALSSRDPLDCMAEAVADDTKRIGTTCGGGIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSGTEMTERVTTLTPKQARKLLSRLCWIGTTSRGLLVIELRNPLCISGASLTSVPDGAGRLPFTFLAQSDRPGDVNLPARLYWWKEETHDAA
Ga0245161_102175	Ga0245161_10217511	F075480	MNKTKQEKWQRAYGDTPDSFRQRVASSLPKGEESRHVAFPRRAMVLAAALVLVLTTAYAAVVTHTELVWNAGHPIENEADDRLGLLTGKAGTSGDSLTIGGVTFTVQDGIYSPETGQLFASAVISADESVQLVGVESDMEWEVRAVTPVSEKLDPSGISWAEWAEQNGKTLVPVRMEIRGSEQFPNIPMFGDFLTQNPDGTVSVGFQVDLSEEDVSHLKSCEVQLECRVGAFGKDGKATQWQKEILTATITFK
Ga0245161_102297	Ga0245161_1022974	F047755	METDKVKYLIDMINNIDIKDKLRLAICMSQSKWSGLIYNTKENYEKFDNMLKSIDEEYRTTIINFGKYKLVMFAMAKLMEMETTEQNQVALFIFNRIQXXXXXXXXXXXXESF
Ga0245161_102762	Ga0245161_10276210	F060985	MSNIDEKVKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSGTAMGMCNIFKNQDHEFWYRVIKPWFKPERFGITHLWFLLEHGTYFCSNEYLLSNGKLHTIKGIQWVEIPLSLVFDNRVFGYWFPPYKKYIPHRLRVLRLALKDLERIKEEYGKD
Ga0245161_102762	Ga0245161_10276212	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESQVLYSEIELLQEKLDLIREEICELIGVNPNLEKQGHEDNYVFNLNIESDNQIGFFLQETEL
Ga0245161_102762	Ga0245161_1027629	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0245161_104755	Ga0245161_1047557	F047755	MEKVKEQSKLEYLIDIIKGMDIKDKLRLAICMNDSEWLTLDYDKKEMYNKFDSKLKEIGQEYRTILINFGQSKYFIINFAMSKLMEMEQTDRNKVALYLFNNIKIQ
Ga0245161_107209	Ga0245161_1072092	F067845	LSACWLGSVNTGTDAEKAAELAQQLGIAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMGYTGDLNKFLYWSGCYGVPEDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0245161_110610	Ga0245161_1106103	F039198	MEKYYGGVKLMQITSCEITNTKYMQVYLTEEELKKQETKEKIENYKKQKYSVAIFVTGKESYPEILKKIVTKQVELNNNEC
Ga0245161_114615	Ga0245161_1146151	F078822	LFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLVLEELLSCATAYL
Ga0245161_131912	Ga0245161_1319122	F013656	MSKIYKQANLCETETTVNVLYGEKILSIYTNKVDLQKELQKILGEPSAAYKRGRSITGSRWEVPLKEKSKISKLILKANIFEL
Ga0245161_142219	Ga0245161_1422192	F076189	VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVPDLYREFAELLACFDLHAIQSAQKPLHMLCNFHENTLWLLIFYTDYAII
Ga0245161_152089	Ga0245161_1520892	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDNYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGEFIVFSAW