3300029728: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37282

Overview

Basic Information

• IMG/M Taxon OID: 3300029728
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283833 | Ga0245197
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37282
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 163501334
• Sequencing Scaffolds: 11
• Novel Protein Genes: 26
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F044555	Metagenome / Metatranscriptome	154	N
F047126	Metagenome	150	N
F050794	Metagenome	145	N
F055775	Metagenome	138	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F061388	Metagenome	132	N
F064817	Metagenome	128	N
F068941	Metagenome	124	N
F075481	Metagenome	119	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078822	Metagenome	116	N
F080673	Metagenome	115	N
F081354	Metagenome	114	Y
F083451	Metagenome	113	N
F083452	Metagenome	113	N
F084124	Metagenome	112	Y
F085718	Metagenome	111	N
F087335	Metagenome	110	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F093883	Metagenome	106	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245197_100138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	151645
Ga0245197_100142	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	150875
Ga0245197_100185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	127770
Ga0245197_100308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	87877
Ga0245197_100329	Not Available	84086
Ga0245197_100627	Not Available	45366
Ga0245197_101012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	26614
Ga0245197_104673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3599
Ga0245197_106273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2634
Ga0245197_114039	Not Available	1215
Ga0245197_125150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	705

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245197_100138	Ga0245197_10013829	F068941	MKNNKGLIIGIIGLIIVMIGGTYAYYKWNSTSNINISIGIEGSTITFNGGSNVTGSLTPVDSKEEGIKKDITVIASEAGSTMSLYMELTTMPSELKEESFVYELYYNDTTLVTKGNFKDITYASSGVTTLTLFTDRPVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFDLYATGKNATLNG
Ga0245197_100142	Ga0245197_10014210	F050794	MAPVGTLYIMQLDAFLHRKIMQDLRIQRVKVLMMLYTSNYFVNVRQKQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDVLLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIKAMMRDLLDELKDDIDLNILIFDVSQLLIKCNLFRLEAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYNRFVW
Ga0245197_100142	Ga0245197_100142121	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGDRPIVVMVENDNADDYIILRYNETGRRNINSQSSLDLMLSIKEREPELWIVVISYIDNKDKRQKMVLPNFFSKNIRGNIYLQGSSKSNVSYYVNRLKEDECFDELCEKIRVKRDRIYNMEIISLSDDEATV
Ga0245197_100142	Ga0245197_100142129	F080673	MDEIELLRLQDEALSYLRDNITKDEAYYILTTDKDMIEILIANKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLVASYIGVNMYFRGQDVNAILNNINREKVMEYPYIAIQLDNIRTIEKRRVIFEITGHRMNDNKERIDFMFVYFMARIL
Ga0245197_100142	Ga0245197_100142137	F057001	MINKELNKVQNEVKKSNEKTLTGAVKAWCNLFKSGKEINDILKENDIKVSKEVVPALVALAKDKEVVIQLCKEILPRVNNTFCAYKEVEREYYDKNDKDKNKKLKMNEIEDMAILGSSHKRFGYNEPIEFDFGIYYETFNGTDKRIVKCAVPIKRYTFNLIAKCVTYYLTHPKNDR
Ga0245197_100142	Ga0245197_100142141	F083452	MSGRVKIKSKDKDKKPKIDVFKVIENRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHQNYLNLLEEELGAKLSIDLIDKYIKRK
Ga0245197_100142	Ga0245197_100142160	F058555	MRTAFYEHYLPSLNNKWATFTGYPFIRITCFVLMKLVYSQQIKKKTMETKITLLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYRHVIENCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKDIFVGKKRSVYKCLDKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKNLIGIGMQEISQSTIYRYISMFLDMCKKSISDLYEEVVKNNGVVNTKDNNNVTIGHIRASYKGSVLHILISTDYIINVFLGKKSAEMSKAG
Ga0245197_100142	Ga0245197_100142166	F093883	MEEDKDIKKEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKGIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKAD
Ga0245197_100142	Ga0245197_100142172	F089592	MKEILKSRKVLAEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGMDKDEVDKLVDQRVNNIMKPFENISQKDLSQTNFEFWDDAKDKIYMGKIYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGDDDRQAVIDLLLYIGIVTRPDLTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIISMSNIDNKSKTKKVKDIKKKDDVEEGNKVKEE
Ga0245197_100142	Ga0245197_100142173	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAGRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEATDFVMWEAKNENIHELLGDENNRPSYDYRETFYSIGNGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGIQSTDIDPELPDPLVEEILDMVAKQFNLNENELYRYRMDKDNVASFK
Ga0245197_100142	Ga0245197_100142180	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYDYVPDPVVGNPFNTYVEFRSRKPGMANVDWGDGIKEQFPMTKVQGQDNYRIIFRSLAIQYKKNPDTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYADIEICKMTAFPIVDIPGLEFLVVSHTMYVNDGIPVDKLSRSNKLTYIDFQNVGQRMTEMPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQILELSSCYLDRYIKEFNDLPKLTSLRTHPGPSDMWNYFDINTLPFFEVDKINPNIANFDFLNDWVSGERRTGWNDDNMSGRGLDHLIGFFVYHSNSIRVDKLPDYIYEMRSVTRFVMDYSTYSQKRSDDFVNSFYDLVVGWDQITMASVAKDGERNQFYGLAVSMYGSKFPDENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQGWTIKPE
Ga0245197_100142	Ga0245197_100142184	F075481	MMRLRISLRAIVCLGLSLFLSSCGSRRQVSEASIDSRLISRIETMINEVIDRKMVEIKTSDLNADIVITERKFDTDKDIDPATGERPVSSVTDAHIVIGRRDSTVTTDSLGVDKTITSIEDIDKKTDIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFGLIK
Ga0245197_100142	Ga0245197_10014257	F076653	MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFLPGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKEYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYDKGFKERLAKRFNKSLGGDGELFGANLACMVCDRKDIDWEALRLWLDKYDDPTDKGMVNSPIQFMYLYLYYTFNK
Ga0245197_100142	Ga0245197_10014268	F083451	MDKNEREKQVLDLLMSRRDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLIKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVEFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDIFKEEAKMTKETDMSKIEEFNKRLDHE
Ga0245197_100142	Ga0245197_1001427	F077313	MSKYVIKRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTQIGFDIQQPDINTIDTSDLSALVDSNKKVDKSGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHADGGTPVSLEQGTEVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGTRARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVVPGPMDIGDVENPDVKLDMPELIDSNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGMERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVAQRTWADNVNAQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
Ga0245197_100185	Ga0245197_1001857	F068941	MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTIMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNG
Ga0245197_100308	Ga0245197_10030860	F084124	LNKQAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLNRKILWALPKPAIFEKIE
Ga0245197_100308	Ga0245197_10030876	F084124	LLFGGLNTTAKAFARATKENTLHFHSQRNALSMFLAFLFIMAVACFNKLSFSTQTAWLFATEELLYWKIIMGAAQTRKPLKRLDLNF
Ga0245197_100329	Ga0245197_10032955	F064817	MNIKNLFNRFCKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSSKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHSWLKEFELLVFKRNPDTDMLFLTHSLTYILDQTEEEGRRICIQNIIERNLNQENQDENETI
Ga0245197_100329	Ga0245197_10032965	F044555	MKTTNPSSRITLSQNGNQILTTCKVYKEPNYILSMSNEEILEFISGLDYMGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0245197_100627	Ga0245197_10062746	F055775	MAQIAQQDNLVIEVTTTAAALDDATKKKLIECIKGGTITDVILVTKEAEKKISHARVVGWLVDTTGDSPKYTIDIINANSGTVTAIKLN
Ga0245197_101012	Ga0245197_10101223	F081354	LSAKRALDLVRENQRSSAHNFVKDFSSIYPESRRRSPLKKGAVTENPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNPLR
Ga0245197_104673	Ga0245197_1046735	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCEFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRHFHILSKKLQKTC
Ga0245197_106273	Ga0245197_1062734	F061388	MTDYLIARSGGYGRYSAYSELFQGFDSSGNAIMHRSSSGGLLGRTAKKELEGHLSRIRRYDPNMTRDQAADRLISEAMSKYSMRDRSDISDMFEGAGIGKAYPLGSGHGTNYWSGRDSGKEIFAEITSAEAAHPGSLMAIKEYFPKTYKVYQDMLKARKKK
Ga0245197_114039	Ga0245197_1140392	F078822	TFFDIFLSFPNAFLKAFHPHAVRFPVTFLLVHRFYLAFEELLSCATAYL
Ga0245197_125150	Ga0245197_1251501	F087335	MIELYFNDANLMPENREEEQYAEAALNSILAGKTADVEMCIQPCFYDAPLHKGLLYNLDDGTTLRIRPILNEVG