3300029725: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37323

Overview

Basic Information

• IMG/M Taxon OID: 3300029725
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283844 | Ga0245208
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37323
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 139593422
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068811	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F078822	Metagenome	116	N
F101355	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245208_101088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	18534
Ga0245208_108396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1720
Ga0245208_111196	All Organisms → cellular organisms → Bacteria	1294
Ga0245208_114398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1013

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245208_101088	Ga0245208_10108818	F074899	MSGRKQWNKQAATSSFLDKKPLESLILQGLEGSTTLGKDEVGSSNLPSSSNINRLNRLI
Ga0245208_108396	Ga0245208_1083963	F101355	MAFWFIQWYLPSAQPPQPKGAGAVFSYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFSLFKIYLKKIDFFQNIA
Ga0245208_111196	Ga0245208_1111961	F078822	FLSLPNAFLEAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0245208_114398	Ga0245208_1143982	F068811	MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRIK