3300029723: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36020

Overview

Basic Information

• IMG/M Taxon OID: 3300029723
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283867 | Ga0245231
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36020
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 115896282
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F067845	Metagenome	125	N
F087334	Metagenome	110	N
F088921	Metagenome	109	N
F089005	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245231_100346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	59974
Ga0245231_102611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	6069
Ga0245231_103213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4718
Ga0245231_104749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2797
Ga0245231_107944	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245231_100346	Ga0245231_10034657	F089005	LTKSKQRSIIAHALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSE
Ga0245231_102611	Ga0245231_1026113	F087334	MASRYPFVGATAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAIAFLYHPKNFFLYRAAALFEYREKRQ
Ga0245231_103213	Ga0245231_1032135	F088921	LGETVRLYKIGARENHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVTNKSAMIRDKM
Ga0245231_104749	Ga0245231_1047492	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMGYTDDLNDFLFWSGCYGVPDDVTVALLLDDSTAMTARLYAPQADSAAAELLEDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0245231_107944	Ga0245231_1079442	F042936	VWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSQLRGKG