Sample 3300029702

Overview

Basic Information
IMG/M Taxon OID	3300029702 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133139 \| Gp0283900 \| Ga0245265
Sample Name	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37293
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	198498295
Sequencing Scaffolds	10
Novel Protein Genes	10
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	United Kingdom: London
Coordinates	Lat. (^o)	51.5	Long. (^o)	-0.12	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F039147	Metagenome	164	N
F042910	Metagenome	157	N
F047126	Metagenome	150	N
F050793	Metagenome	145	N
F066905	Metagenome	126	Y
F068855	Metagenome	124	N
F081354	Metagenome	114	Y
F092227	Metagenome	107	N
F099269	Metagenome	103	N

Family

Category

Number of Sequences

3D Structure?

F013656

Metagenome

269

F039147

Metagenome

164

F042910

Metagenome

157

F047126

Metagenome

150

F050793

Metagenome

145

F066905

Metagenome

126

F068855

Metagenome

124

F081354

Metagenome

114

F092227

Metagenome

107

F099269

Metagenome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0245265_100044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	255594	Open in IMG/M
Ga0245265_100553	All Organisms → cellular organisms → Bacteria	55466	Open in IMG/M
Ga0245265_100738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	44817	Open in IMG/M
Ga0245265_101276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	27660	Open in IMG/M
Ga0245265_101656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	21673	Open in IMG/M
Ga0245265_106574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3967	Open in IMG/M
Ga0245265_112580	Not Available	1817	Open in IMG/M
Ga0245265_116234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1360	Open in IMG/M
Ga0245265_122042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	966	Open in IMG/M
Ga0245265_122338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	951	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0245265_100044

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158

255594

Open in IMG/M

Ga0245265_100553

All Organisms → cellular organisms → Bacteria

55466

Open in IMG/M

Ga0245265_100738

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

44817

Open in IMG/M

Ga0245265_101276

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella

27660

Open in IMG/M

Ga0245265_101656

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

21673

Open in IMG/M

Ga0245265_106574

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

3967

Open in IMG/M

Ga0245265_112580

Not Available

1817

Open in IMG/M

Ga0245265_116234

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

1360

Open in IMG/M

Ga0245265_122042

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium

966

Open in IMG/M

Ga0245265_122338

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

951

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0245265_100044	Ga0245265_100044154	F068855	VPTVEAQGPQVRKSLAPQWLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSTALSEGGAVW
Ga0245265_100553	Ga0245265_10055342	F042910	LADRLYCALNGTTLRDLDARIHLLDVEELAPAVRTVTASRIGGGQHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTISAAGKISFQGLTIAPGAAVRIHHDAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEASAAAFVSGRCKGRYC
Ga0245265_100738	Ga0245265_10073814	F039147	MRARRLLILLMMLLLLPQAQAERLPLYTRPNNVDEAMPFQLRPTELSICSVTRAMGGVVVLANDNNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYSMSRVPNYRMPDLTHAISELTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMENLSCLNISYRDLETDEVYTYPASLTRMHVCGSVLAISVMQENGIKVVLVDLTDGAIREIADESLEAMYEWADGELLLWRLEGSTNEISRSSGTYTLSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEEPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPKVILAQETLAKSAMNAASLAARMSASADAPDILRLGLTPNTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGVYRDAVTRDGKIYALPINAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVHDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTTNAELVGKMLAQVIADQEATAKCVLLADYDEPIEDSYYLIMVRDYEKTLTELRRQQENAHVWKKQGIQERIDEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFSALVSQVHQGEISLEEFVEKADKLIEGLEQ
Ga0245265_101276	Ga0245265_1012769	F099269	MRRPPFFVHGVLVSVQVGELLLLDDLGDRAGGASVLASATGDAGILVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV
Ga0245265_101656	Ga0245265_10165616	F050793	MRKQVLVPENVEMADIHAIQTRVKKHNLLTVVLLIPLFAGCALRESHETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGVWENDEQDEVFPTLADVREYATQEGYEPMAVDFETMTDEEFQQFLDRSRI
Ga0245265_106574	Ga0245265_1065741	F047126	QTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPHGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRHFHILSKKLQKTC
Ga0245265_112580	Ga0245265_1125803	F066905	GCNNGGFLGNLFGGCGCGDNSMLFFILIFLILFCGCGNSCCNR
Ga0245265_116234	Ga0245265_1162341	F092227	YQRRPFGPMNEEKRKRILRWGCLILAGVFTLSLLGSVVVMLLV
Ga0245265_122042	Ga0245265_1220422	F081354	LVRENQQSSAHNFVKDFSSIFLKSSRRSPLKKGAATENPLEYGKTEVQILFEPLQATISSMELPKNFENKKLPNTLRRLAFLPFHL
Ga0245265_122338	Ga0245265_1223383	F013656	MDKKIYKEPIKSETETTINVLYGENKIVIYTNKVSLQRKLNRVLGKPSKEYKIKRSISGSSWDISLNDKSKIQKLILKGNIYEL

Scaffold ID

Protein ID

Family

Sequence

Ga0245265_100044

Ga0245265_100044154

F068855

VPTVEAQGPQVRKSLAPQWLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSTALSEGGAVW

Ga0245265_100553

Ga0245265_10055342

F042910

LADRLYCALNGTTLRDLDARIHLLDVEELAPAVRTVTASRIGGGQHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTISAAGKISFQGLTIAPGAAVRIHHDAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEASAAAFVSGRCKGRYC

Ga0245265_100738

Ga0245265_10073814

F039147

MRARRLLILLMMLLLLPQAQAERLPLYTRPNNVDEAMPFQLRPTELSICSVTRAMGGVVVLANDNNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYSMSRVPNYRMPDLTHAISELTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMENLSCLNISYRDLETDEVYTYPASLTRMHVCGSVLAISVMQENGIKVVLVDLTDGAIREIADESLEAMYEWADGELLLWRLEGSTNEISRSSGTYTLSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEEPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPKVILAQETLAKSAMNAASLAARMSASADAPDILRLGLTPNTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGVYRDAVTRDGKIYALPINAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVHDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTTNAELVGKMLAQVIADQEATAKCVLLADYDEPIEDSYYLIMVRDYEKTLTELRRQQENAHVWKKQGIQERIDEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFSALVSQVHQGEISLEEFVEKADKLIEGLEQ

Ga0245265_101276

Ga0245265_1012769

F099269

MRRPPFFVHGVLVSVQVGELLLLDDLGDRAGGASVLASATGDAGILVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV

Ga0245265_101656

Ga0245265_10165616

F050793

MRKQVLVPENVEMADIHAIQTRVKKHNLLTVVLLIPLFAGCALRESHETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGVWENDEQDEVFPTLADVREYATQEGYEPMAVDFETMTDEEFQQFLDRSRI

Ga0245265_106574

Ga0245265_1065741

F047126

QTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPHGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRHFHILSKKLQKTC

Ga0245265_112580

Ga0245265_1125803

F066905

GCNNGGFLGNLFGGCGCGDNSMLFFILIFLILFCGCGNSCCNR

Ga0245265_116234

Ga0245265_1162341

F092227

YQRRPFGPMNEEKRKRILRWGCLILAGVFTLSLLGSVVVMLLV

Ga0245265_122042

Ga0245265_1220422

F081354

LVRENQQSSAHNFVKDFSSIFLKSSRRSPLKKGAATENPLEYGKTEVQILFEPLQATISSMELPKNFENKKLPNTLRRLAFLPFHL

Ga0245265_122338

Ga0245265_1223383

F013656

MDKKIYKEPIKSETETTINVLYGENKIVIYTNKVSLQRKLNRVLGKPSKEYKIKRSISGSSWDISLNDKSKIQKLILKGNIYEL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029702: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37293

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences